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• [spctools-discuss] TPP Comet search time-out Steven He
  • [spctools-discuss] Re: TPP Comet search time-out Will Comstock
  • Re: [spctools-discuss] Re: TPP Comet search time-out Fahad Saeed
  • Re: [spctools-discuss] Re: TPP Comet search time-out 'David Shteynberg' via spctools-discuss
• [spctools-discuss] TPP offline version? j.l.r...@gmail.com
  • Re: [spctools-discuss] TPP offline version? 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] PTMProphet flags Pedro Cardoso
  • Re: [spctools-discuss] PTMProphet flags 'David Shteynberg' via spctools-discuss
• [spctools-discuss] MSconvert stopped working Tim Fugmann
• [spctools-discuss] Re: Max input file size limit for comet search? Jason Winget
  • RE: [spctools-discuss] Re: Max input file size limit for comet search? Eric Deutsch
  • Re: [spctools-discuss] Re: Max input file size limit for comet search? Steven He
• [spctools-discuss] Precursor Intensity after Comet search Will Comstock
  • Re: [spctools-discuss] Precursor Intensity after Comet search 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Precursor Intensity after Comet search Will Comstock
• [spctools-discuss] TPP 6.0 Libra Error Will Comstock
  • Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 6.0 Libra Error Will Comstock
  • Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 6.0 Libra Error Will Comstock
  • Re: [spctools-discuss] TPP 6.0 Libra Error 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0 Huang xiaoxiang
  • Re: [spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] PTMProphet and best localization score Niko Pinter
  • Re: [spctools-discuss] PTMProphet and best localization score 'David Shteynberg' via spctools-discuss
• [spctools-discuss] TPP 6.0.0 Release is now available 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] DIALib-QC Candice Lavelle
  • Re: [spctools-discuss] DIALib-QC 'Charu Midha' via spctools-discuss
• [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
  • RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
  • Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
  • RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' Eric Deutsch
  • Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
  • RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
  • Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
  • RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Michael Hoopmann' via spctools-discuss
  • Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...' 'Alastair Skeffington' via spctools-discuss
• [spctools-discuss] Exporting StPeter´s ng to mzid mele...@gmail.com
  • [spctools-discuss] Re: Exporting StPeter´s ng to mzid Jason Winget
  • [spctools-discuss] Re: Exporting StPeter´s ng to mzid mele...@gmail.com
  • RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid Eric Deutsch
  • RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid Eric Deutsch
  • Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid mele...@gmail.com
  • Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output dfermin
  • Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output Jimmy Eng
  • Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output dfermin
• [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC Oded
• [spctools-discuss] Add Additional fields in spectrast-generated spectral libraries Sebastian Paez
• Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) Will Comstock
  • Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) Will Comstock
  • Re: [spctools-discuss] PTMProphet command failure (for larger datasets?) 'David Shteynberg' via spctools-discuss
• Re: [spctools-discuss] job end with error when following PTMprophet tutorial Panyue Chen
  • Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] job end with error when following PTMprophet tutorial Panyue Chen
  • Re: [spctools-discuss] job end with error when following PTMprophet tutorial 'David Shteynberg' via spctools-discuss
• [spctools-discuss] convert Splib Benoit Kunath
  • [spctools-discuss] Re: convert Splib Wenguang
  • RE: [spctools-discuss] Re: convert Splib Eric Deutsch
• Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
  • Re: [spctools-discuss] Error in fitted models for MSgf+ search 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
  • Re: [spctools-discuss] Error in fitted models for MSgf+ search 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
  • Re: [spctools-discuss] Error in fitted models for MSgf+ search Asif Ahmed
• [spctools-discuss] TPP working directory - how to change Ladislav Cséfalvay
  • Re: [spctools-discuss] TPP working directory - how to change 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] TPP working directory - how to change Ladislav Cséfalvay
• [spctools-discuss] propogating retention time from .ms2 to .sptxt with spectrast Matthew Russell
  • [spctools-discuss] Re: propogating retention time from .ms2 to .sptxt with spectrast Juergen Bartel
• [spctools-discuss] Tutorial DIA Analysis Cethgar XXX
  • Re: [spctools-discuss] Tutorial DIA Analysis 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Error generation while converting raw files giangiacomo beretta
  • Re: [spctools-discuss] Error generation while converting raw files 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Error generation while converting raw files giangiacomo beretta
  • Re: [spctools-discuss] Error generation while converting raw files 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Error generation while converting raw files giangiacomo beretta
  • Re: [spctools-discuss] Error generation while converting raw files 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
  • Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
  • Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] When to use "Decoy hits to pin down negative distribution" in PeptideProphet Soroush F
• [spctools-discuss] killjob sudarshan kumar
• Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides? James Go
  • Re: [spctools-discuss] Is there a threshold of min. peptide probability that ProteinProphet uses to pick the peptides? 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] comet search parameters for TMT labeled tryptic peptides sudarshan kumar
  • [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides Phillip Wilmarth
  • Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides sudarshan kumar
  • Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides sudarshan kumar
  • Re: [spctools-discuss] Re: comet search parameters for TMT labeled tryptic peptides Phillip Wilmarth
• [spctools-discuss] iprophet is search showing blank page sudarshan kumar
  • Re: [spctools-discuss] iprophet is search showing blank page 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Peptide sequence column in result contains modification mass sudarshan kumar
  • Re: [spctools-discuss] Peptide sequence column in result contains modification mass AZIZ ALNAKLI
• [spctools-discuss] Related to St Peter tool in TPP Mehar Un Nissa
  • Re: [spctools-discuss] Related to St Peter tool in TPP 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] Related to St Peter tool in TPP Jason Winget
• [spctools-discuss] Problems in search rita maria de Almeida
  • Re: [spctools-discuss] Problems in search sudarshan kumar
  • Re: [spctools-discuss] Problems in search rita maria de Almeida
• [spctools-discuss] Endogenous peptide identification sudarshan kumar
  • RE: [spctools-discuss] Endogenous peptide identification 'Eric Deutsch' via spctools-discuss
  • Re: [spctools-discuss] Endogenous peptide identification sudarshan kumar
• [spctools-discuss] combine fractions, replicates and different parameters Asif Ahmed
• [spctools-discuss] Select only top matching protein in spectrast shubha...@gmail.com
  • Re: [spctools-discuss] Select only top matching protein in spectrast 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Select only top matching protein in spectrast shubha...@gmail.com
• Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Jimmy Eng
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] command "C:/TPP/bin/PeptideProphetParser" failed Asif Ahmed
• [spctools-discuss] TPP seems never stop in windows...... na jiang
  • Re: [spctools-discuss] TPP seems never stop in windows...... 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] TPP seems never stop in windows...... 姜娜
  • Re: [spctools-discuss] TPP seems never stop in windows...... 姜娜
• [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet Soroush F
  • Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet Soroush F
  • Re: [spctools-discuss] Not all the proteins in PeptideProphet appear in ProteinProphet 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Linux Build Error Nathan Wamsley
  • Re: [spctools-discuss] Linux Build Error 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Linux Build Error 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Initiating Petunia GUI after TPP installation Windows Server 2019 Miguel Cosenza
  • [spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019 Miguel Cosenza
  • Re: [spctools-discuss] Re: Initiating Petunia GUI after TPP installation Windows Server 2019 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] DIA to mzML question jane n
  • Re: [spctools-discuss] DIA to mzML question 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] DIA to mzML question Science Gurl
  • Re: [spctools-discuss] DIA to mzML question Mark Athanason
  • Re: [spctools-discuss] DIA to mzML question Science Gurl
  • Re: [spctools-discuss] DIA to mzML question Mark Athanason
  • Re: [spctools-discuss] DIA to mzML question Science Gurl
• [spctools-discuss] Run TPP on linux without root Jieyi Xiong
• [spctools-discuss] maximum fasta file size AZIZ ALNAKLI
  • RE: [spctools-discuss] maximum fasta file size 'Eric Deutsch' via spctools-discuss
  • Re: [spctools-discuss] maximum fasta file size AZIZ ALNAKLI
  • RE: [spctools-discuss] maximum fasta file size 'Eric Deutsch' via spctools-discuss
• [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
  • RE: [spctools-discuss] SpectraST LibraryBuilding Decoys 'Eric Deutsch' via spctools-discuss
  • Re: [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
  • Re: [spctools-discuss] SpectraST LibraryBuilding Decoys Juergen Bartel
• [spctools-discuss] TPP 5.2.0 installation error CentOS 7.8 Wenhao
  • [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 Wenhao
  • [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 Law
  • RE: [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 'Eric Deutsch' via spctools-discuss
  • Re: [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 Malcolm Cook
  • Re: [spctools-discuss] Re: TPP 5.2.0 installation error CentOS 7.8 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
  • Re: [spctools-discuss] ProteinProphet sticking in findDegenGroups3 Emily Kawaler
• [spctools-discuss] LFQ vipulb...@gmail.com
  • Re: [spctools-discuss] LFQ 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] LFQ Robert Winkler
• [spctools-discuss] Converting Orbitrap Eclipse files to mzML Laura Muehlbauer
  • Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML Jason Winget
  • Re: [spctools-discuss] Converting Orbitrap Eclipse files to mzML Laura Muehlbauer
• [spctools-discuss] X!Tandem- Help please vipulb...@gmail.com
  • Re: [spctools-discuss] X!Tandem- Help please Robert Winkler
  • Re: [spctools-discuss] X!Tandem- Help please vipulb...@gmail.com
  • Re: [spctools-discuss] X!Tandem- Help please Robert Winkler
  • Re: [spctools-discuss] X!Tandem- Help please Jimmy Eng
  • Re: [spctools-discuss] X!Tandem- Help please vipulb...@gmail.com
• [spctools-discuss] X!Tandem taking too long vipulb...@gmail.com
  • [spctools-discuss] Re: X!Tandem taking too long vipulb...@gmail.com
  • [spctools-discuss] Re: X!Tandem taking too long vipulb...@gmail.com
• [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML) Robert
  • Re: [spctools-discuss] ProtyQuant for comparing TPP samples (.pepXML) 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Crosslink FDR from PeptideProphet Lindsey Ulmer

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