I changed the ARCH_DISTRO in the Makefile.incl and now its doing something! It compiles up to a point where it tells me:
make: *** No rule to make target '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/ASAPRatioPeptideParserTagListComparator.o', needed by '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/libtpp.a'. Stop. Best, Constantin Am Mittwoch, 13. April 2016 17:35:23 UTC+2 schrieb jsl...@systemsbiology.org: > > It looks like there is a space between SUSE and LINUX. If so this would > explain some of the troubles. Easiest thing to do is set ARCH_DISTRO to > something without a space, say "SUSE". You can do this directly on the > command line as so: > > make ARCH_DISTRO=SUSE > > Or in the src/ directory you can add it to the bottom of Makefile.incl in > the src directory. > > -Joe > > > On Wed, Apr 13, 2016 at 12:46 AM, Constantin <wqn...@gmail.com > <javascript:>> wrote: > >> Hi Joe, >> >> thanks for the quick reply. The output is: SUSE LINUX. >> >> Best, >> Constantin >> >> Am Dienstag, 12. April 2016 20:28:12 UTC+2 schrieb >> jsl...@systemsbiology.org: >>> >>> What's the output for the following command? >>> >>> lsb_release -i -s || cut -d ' ' -f1 /etc/*release | head -n1 >>> >>> On Tue, Apr 12, 2016 at 9:39 AM, Constantin <wqn...@gmail.com> wrote: >>> >>>> Hi everyone, >>>> >>>> I have some trouble getting the TPP v4.8 to compile on my LINUX >>>> distribution (SUSE LINUX Enterprise Desktop 12). >>>> My goal is to create spectral libraries from SpectraST. When running >>>> the makefile I get the following error messages: >>>> >>>> Makefile.incl:253: warning: overriding recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:250: warning: ignoring old recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:270: warning: overriding recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:253: warning: ignoring old recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:275: warning: overriding recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:270: warning: ignoring old recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:305: warning: overriding recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:275: warning: ignoring old recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:315: warning: overriding recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:305: warning: ignoring old recipe for >>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:314: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:446: warning: overriding recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:315: warning: ignoring old recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> Makefile.incl:445: target '/trans_proteomic_pipeline/src/../build/SUSE' >>>> given more than once in the same rule >>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:208: >>>> >>>> warning: overriding recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> Makefile.incl:446: warning: ignoring old recipe for target >>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:207: >>>> >>>> *** mixed implicit and normal rules. Stop. >>>> >>>> From what I could read off the messages, there seems to be some problem >>>> with ProteoWizard. >>>> >>>> Best, >>>> Constantin >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> To post to this group, send email to spctools...@googlegroups.com. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> >>> >>> -- >>> Joe Slagel >>> Institute for Systems Biology >>> jsl...@systemsbiology.org >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com <javascript:>. >> To post to this group, send email to spctools...@googlegroups.com >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > > > -- > Joe Slagel > Institute for Systems Biology > jsl...@systemsbiology.org <javascript:> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
