Doesn't look like OBJ_ARCH is set properly now either. Can you run "make info" and check to see what its value is?
You might try assigning it a value, something like the following might work: make ARCH=SUSE OBJ_ARCH=$PWD/../build/SUSE On Wed, Apr 13, 2016 at 9:24 AM, Constantin <wqn...@gmail.com> wrote: > I changed the ARCH_DISTRO in the Makefile.incl and now its doing > something! It compiles up to a point where it tells me: > > make: *** No rule to make target > '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/ASAPRatioPeptideParserTagListComparator.o', > needed by '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/libtpp.a'. > Stop. > > Best, > Constantin > > Am Mittwoch, 13. April 2016 17:35:23 UTC+2 schrieb > jsl...@systemsbiology.org: >> >> It looks like there is a space between SUSE and LINUX. If so this would >> explain some of the troubles. Easiest thing to do is set ARCH_DISTRO to >> something without a space, say "SUSE". You can do this directly on the >> command line as so: >> >> make ARCH_DISTRO=SUSE >> >> Or in the src/ directory you can add it to the bottom of Makefile.incl in >> the src directory. >> >> -Joe >> >> >> On Wed, Apr 13, 2016 at 12:46 AM, Constantin <wqn...@gmail.com> wrote: >> >>> Hi Joe, >>> >>> thanks for the quick reply. The output is: SUSE LINUX. >>> >>> Best, >>> Constantin >>> >>> Am Dienstag, 12. April 2016 20:28:12 UTC+2 schrieb >>> jsl...@systemsbiology.org: >>>> >>>> What's the output for the following command? >>>> >>>> lsb_release -i -s || cut -d ' ' -f1 /etc/*release | head -n1 >>>> >>>> On Tue, Apr 12, 2016 at 9:39 AM, Constantin <wqn...@gmail.com> wrote: >>>> >>>>> Hi everyone, >>>>> >>>>> I have some trouble getting the TPP v4.8 to compile on my LINUX >>>>> distribution (SUSE LINUX Enterprise Desktop 12). >>>>> My goal is to create spectral libraries from SpectraST. When running >>>>> the makefile I get the following error messages: >>>>> >>>>> Makefile.incl:253: warning: overriding recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:250: warning: ignoring old recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:270: warning: overriding recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:253: warning: ignoring old recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:275: warning: overriding recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:270: warning: ignoring old recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:305: warning: overriding recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:275: warning: ignoring old recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:315: warning: overriding recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:305: warning: ignoring old recipe for >>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:314: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:446: warning: overriding recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:315: warning: ignoring old recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> Makefile.incl:445: target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in the >>>>> same rule >>>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:208: >>>>> warning: overriding recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> Makefile.incl:446: warning: ignoring old recipe for target >>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:207: >>>>> *** mixed implicit and normal rules. Stop. >>>>> >>>>> From what I could read off the messages, there seems to be some >>>>> problem with ProteoWizard. >>>>> >>>>> Best, >>>>> Constantin >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to spctools-discu...@googlegroups.com. >>>>> To post to this group, send email to spctools...@googlegroups.com. >>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>> >>>> >>>> -- >>>> Joe Slagel >>>> Institute for Systems Biology >>>> jsl...@systemsbiology.org >>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@googlegroups.com. >>> To post to this group, send email to spctools...@googlegroups.com. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> >> >> -- >> Joe Slagel >> Institute for Systems Biology >> jsl...@systemsbiology.org >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Joe Slagel Institute for Systems Biology jsla...@systemsbiology.org -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
