Hi Joe,
Thanks for getting back to me. I'm building on Ubuntu 14.04. I managed to
get through the set-up. I commented out "use strict" in the
ProtXMLViewer.pl.
My next issue now is I'm unable to view/upload/change directory.
TPP states that my current directory is /ISB/data/, but when I try changing
directory, uploading files etc I just get the error:
- Attempted to access non-existing directory.
- Attempted to access forbidden directory.
Any ideas?
I have tried altering tpp_gui_config.pl to set defaults, of 'base_dir',
'www_root' and "data_dir', but so far nothing has worked.
Regards
Craig
On Wednesday, 20 April 2016 18:43:16 UTC+1, jsl...@systemsbiology.org wrote:
>
> What Linux platform/version are you trying to built it for?
>
> On Wed, Apr 20, 2016 at 7:28 AM, Craig Lawless <craig....@manchester.ac.uk
> <javascript:>> wrote:
>
>> Please can anyone help. I've never really had any success installing TPP
>> in previous years on linux and so have avoided until now.
>>
>> I am following the instructions as per the INSTALL_LINUX file provided in
>> the unpacked TPP_4.8.0-src.tgz.
>>
>> I'm using default settings (i.e. no changes to the Makefile.incl file).
>>
>> I run make all.
>>
>> The first warning I get is:
>> svn: E155036: The working copy at
>> '/home/mjfidcl2/TPP2/TPP-4.8.0/trans_proteomic_pipeline/extern/htmldoc'
>> is too old (format 9) to work with client version '1.8.8 (r1568071)'
>> (expects format 31). You need to upgrade the working copy first.
>>
>> I get 100s of warning messages referring to items such as:
>>
>> htmldoc.cxx:385:41: warning: conversion to ‘float’ from ‘double’ may
>> alter its value [-Wconversion]
>> PDFEffectDuration = atof(argv[i]);
>> ^
>> htmllib.cxx:555:18: warning: conversion to ‘hdChar {aka unsigned char}’
>> from ‘int’ may alter its value [-Wconversion]
>> *ptr++ = ch;
>> ^
>> image.h: In destructor ‘virtual hdBMPImage::~hdBMPImage()’:
>> image.h:136:7: warning: inlining failed in call to
>> ‘hdBMPImage::~hdBMPImage()’: call is unlikely and code size would grow
>> [-Winline]
>> class hdBMPImage : public hdImage
>> ^
>> Which ends in:
>> Formatting htmldoc.pdf...
>> Aborted (core dumped)
>> make[2]: *** [htmldoc.pdf] Error 134
>>
>> I then get similar warning all the way through.
>> ../src/H5Eprivate.h:54:40: warning: anonymous variadic macros were
>> introduced in C99 [-Wvariadic-macros]
>> #define HDONE_ERROR(maj, min, ret_val, ...) { \
>> ^
>> ../src/H5Eprivate.h:66:40: warning: anonymous variadic macros were
>> introduced in C99 [-Wvariadic-macros]
>> #define HGOTO_ERROR(maj, min, ret_val, ...) { \
>> ^
>> tchecksum.c: In function ‘test_chksum_large’:
>> tchecksum.c:192:26: warning: conversion to ‘uint8_t’ from ‘size_t’ may
>> alter its value [-Wconversion]
>> large_buf[u] = u * 3;
>>
>> ../../src/H5public.h:140:23: warning: ISO C90 does not support 'long
>> long' [-Wlong-long]
>> typedef unsigned long long hsize_t;
>> ^
>> ../../src/H5public.h:141:21: warning: ISO C90 does not support 'long
>> long' [-Wlong-long]
>> typedef signed long long hssize_t;
>> ^
>> Then right at the end I get:
>>
>>
>> /usr/bin/perl -pe
>> "s/\/tpp\/cgi-bin\//\/tpp\/cgi-bin\//g;s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath
>>
>> \-wp
>> //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g
>>
>> ;s/\/usr\/bin\/perl/\/usr\/bin\/perl/g " < ../../CGI/ProtXMLViewer.pl >
>> ../../build/Ubuntu-x86_64/ProtXMLViewer.pl
>> /usr/bin/perl -c -I ../../build/Ubuntu-x86_64
>> ../../build/Ubuntu-x86_64/ProtXMLViewer.pl
>> Bareword "endform" not allowed while "strict subs" in use at
>> ../../build/Ubuntu-x86_64/ProtXMLViewer.pl line 271.
>> Bareword "endform" not allowed while "strict subs" in use at
>> ../../build/Ubuntu-x86_64/ProtXMLViewer.pl line 271.
>> ../../build/Ubuntu-x86_64/ProtXMLViewer.pl had compilation errors.
>> make[1]: *** [../../build/Ubuntu-x86_64/ProtXMLViewer.pl] Error 255
>> make[1]: *** Deleting file `../../build/Ubuntu-x86_64/ProtXMLViewer.pl'
>> make[1]: Leaving directory
>> `/home/mjfidcl2/TPP2/TPP-4.8.0/trans_proteomic_pipeline/src/perl_paths'
>> make: *** [perl_paths] Error 2
>>
>> Any help?
>>
>> Regards
>>
>> Craig
>>
>>
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>
>
>
> --
> Joe Slagel
> Institute for Systems Biology
> jsl...@systemsbiology.org <javascript:>
>
>
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