Which search engine are you using? Comet? Tandem?
Comet has num_threads: http://comet-ms.sourceforge.net/parameters/parameters_201601/num_threads.php Tandem has threads: http://www.thegpm.org/TANDEM/api/st.html *From:* spctools-discuss@googlegroups.com [mailto: spctools-discuss@googlegroups.com] *On Behalf Of *Eslam Nouri *Sent:* Tuesday, August 9, 2016 11:05 PM *To:* spctools-discuss@googlegroups.com *Subject:* [spctools-discuss] Multi core analysis Hello_ I am using TPP for the database search of microbiome proteins. Since the fasta file that I have is more than 100 times larger than human uniprot fasta file, the database search for a single DDA run takes more than 12 hours. Is there any way to have faster analysis using multi-cores? Thanks, Eslam Proteomics core facility University of southern California -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
