Peter, Did you export the source code from our SVN repository with :
On Mon, Jun 11, 2018 at 12:42 PM, Peter Sudmant <psudm...@gmail.com> wrote: > gcc version 6.3.0 (GCC) > > Hopefully that's helpful. > > On Mon, Jun 11, 2018 at 2:50 PM David Shteynberg <David.Shteynberg@ > systemsbiology.org> wrote: > >> Hello Peter, >> >> Which compiler version are you using? >> >> Thanks, >> -David >> >> On Mon, Jun 11, 2018 at 11:16 AM, Peter Sudmant <psudm...@gmail.com> >> wrote: >> >>> I seem to be having the same problem, with and without line 301 >>> commented out. has anyone found a solution for this? >>> >>> On Tuesday, November 28, 2017 at 3:17:18 PM UTC-5, David Shteynberg >>> wrote: >>>> >>>> Hello lejeczek, >>>> >>>> Our nightly build executes without any issues using gcc 4.4.7 on linux >>>> using mingw64. Which version of gcc do you have on your system? It seems >>>> to be complaining of not finding the boost_filesystem library when >>>> compiling msconvert "undefined reference to >>>> `boost::filesystem::detail::copy_file". >>>> This build product should be getting built in /home.sysops/appmgr/rpmbuild/ >>>> tar.src/TransProteomicPipeline/TPP_5.1.0-srcbuild/linux-x86_64/lib/libboostfilesystem.a >>>> , can you verify it exists on your system? Google pointed me to an article >>>> with a possible solution: http://stackoverflow.com/ >>>> questions/35007134/c-boost-undefined-reference-to- >>>> boostfilesystemdetailcopy-file >>>> >>>> The suggested solution is to add -DBOOST_NO_CXX11_SCOPED_ENUMS to your >>>> compiler flags. However, common.mk already has this flag enabled on >>>> line 301 for ur >>>> >>>> Can you try to comment out this line in common.mk file in case that >>>> your more modern compiler compiles with -std=c++11 in which case this >>>> definition should be disabled? >>>> >>>> -David >>>> >>>> >>>> On Mon, Nov 20, 2017 at 9:41 AM, lejeczek <pel...@gmail.com> wrote: >>>> >>>>> hi, I wonder.. >>>>> if it fails for you too? >>>>> Is it purely boost problem/failure? >>>>> And lastly, how to solve it? >>>>> I'm on Centos 7.4 >>>>> >>>>> error: >>>>> ... >>>>> g++ -L/home.sysops/appmgr/rpmbuild/tar.src/ >>>>> TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib -o >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/build/linux-x86_64/bin/msconvert /home.sysops/appmgr/rpmbuild/ >>>>> tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/ >>>>> artifacts/pwiz/pwiz_tools/commandline/msconvert.o >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/build/linux-x86_64/lib/libpwiz.a \ >>>>> -L/home.sysops/appmgr/rpmbuild/tar.src/ >>>>> TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib \ >>>>> -lboost_system -lboost_program_options \ >>>>> -lboost_filesystem -lboost_iostreams -lboost_regex -lboost_thread >>>>> -lboost_chrono \ >>>>> -lboost_serialization \ >>>>> -lm -lrt -lz -lpthread >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/build/linux-x86_64/lib/libpwiz.a(Filesystem.o): In function >>>>> `boost::filesystem::copy_file(boost::filesystem::path const&, >>>>> boost::filesystem::path const&, boost::system::error_code&)': >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_ >>>>> 0/boost/filesystem/operations.hpp:502: undefined reference to >>>>> `boost::filesystem::detail::copy_file(boost::filesystem::path const&, >>>>> boost::filesystem::path const&, boost::filesystem::copy_option::enum_type, >>>>> boost::system::error_code*)' >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/build/linux-x86_64/lib/libpwiz.a(Filesystem.o): In function >>>>> `boost::filesystem::copy_file(boost::filesystem::path const&, >>>>> boost::filesystem::path const&)': >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_ >>>>> 0/boost/filesystem/operations.hpp:495: undefined reference to >>>>> `boost::filesystem::detail::copy_file(boost::file,system::path >>>>> const&, boost::filesystem::path const&, >>>>> boost::filesystem::copy_option::enum_type, >>>>> boost::system::error_code*)' >>>>> collect2: error: ld returned 1 exit status >>>>> make: *** [/home.sysops/appmgr/rpmbuild/tar.src/ >>>>> TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/bin/msconvert] >>>>> Error 1 >>>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/extern/ProteoWizard/Makefile:334: recipe for target >>>>> '/home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5. >>>>> 1.0-src/build/linux-x86_64/bin/msconvert' failed >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to spctools-discu...@googlegroups.com. >>>>> To post to this group, send email to spctools...@googlegroups.com. >>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discuss+unsubscr...@googlegroups.com. >>> To post to this group, send email to spctools-discuss@googlegroups.com. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com. >> To post to this group, send email to spctools-discuss@googlegroups.com. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > > -- > Peter > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
