Dear all, I would like to filter my Kojak cross-linking data at a defined FDR. Actually I would like to apply a separate FDR for loop-links, cross-links and non-linked peptides.
So I am wondering if I can use the Error Table provided by the PeptideProphet results to get the minimum probability to apply a certain FDR on my dataset? Or doesn't this work for a dataset containing mixed peptide species? Best regards, Thomas -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/f3dffce4-ac1a-4512-92af-9ef459e8bbd3%40googlegroups.com.
