Hi Lifu, Is this 4-plex iTRAQ, or 8-plex, or TMT? How did you acquire the data on the Fusion? It supports several different acquisition modes. I have a Comet-based pipeline that does isobaric labeling:
https://github.com/pwilmart/PAW_pipeline I only does TMT tags currently. Adding support for iTRAQ might be easy to do, if you are interested in using it. If you want to see how you can analyze quantitative data with notebooks and R, I have lots of examples here: https://github.com/pwilmart/TMT_analysis_examples Cheers, Phil W. On Monday, September 16, 2019 at 3:27:53 PM UTC-7, Lifu Sheng wrote: > > Hi all, > > I am just writing to what might be the best or most popular method to > quantify ITRAQ data generated by Fusion Orbitrp. > > Thank you. > > Best, > Lifu > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/d8fc5aec-3b7b-4547-b15d-5ad7ebf32dfb%40googlegroups.com.
