Hi Alex, Thanks for sharing your file. I have confirmed that the latest version of the code (SVN revision 8004) has corrected this problem. Please update your TPP software to latest SVN revision (or official release.)
Cheers, David On Tue, Jan 28, 2020 at 8:57 AM Alex Zelter <azel...@uw.edu> wrote: > I'm running into the following error when trying to use xinteract to > process Kojak 2.0 results. > The command I'm running is: > /usr/local/tpp/bin/xinteract -Ninteract.pep.xml -p0 -l1 -eT > -D/path/to/database.fasta -PPM -OAPdp -drandom_ -ip ./kojak-output.pep.xml > > INFO: Processing xl MixtureModel ... > PeptideProphet (TPP v5.2.1-dev Flammagenitus, Build 201908090730-7945 > (Linux-x86_64)) AKeller@ISB > read in 0 1+, 34 2+, 11290 3+, 7625 4+, 2948 5+, 874 6+, and 13 7+ > spectra. > Initialising statistical models ... > Found 13541 Decoys, and 9243 Non-Decoys > Iterations: DEBUG HERE ... > ERROR: nan detected in NonParametricDistribution ... > > command "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml' > MINPROB=0 PPM ACCMASS NONPARAM DECOYPROBS DECOY=random_" exited with > non-zero exit code: 256 > QUIT - the job is incomplete > > This was previously working for me using TPP v5.2.0-b1 Flammagenitus > Pre-release Beta, Build 201809101205-7809 (Linux-x86_64)) > > INFO: Processing xl MixtureModel ... > PeptideProphet (TPP v5.2.0-b1 Flammagenitus Pre-release Beta, Build > 201809101205-7809 (Linux-x86_64)) AKeller@ISB > read in 0 1+, 34 2+, 11290 3+, 7625 4+, 2948 5+, 874 6+, and 13 7+ > spectra. > Initialising statistical models ... > Found 13541 Decoys, and 9243 Non-Decoys > Iterations: .........10.........20...... > WARNING: Mixture model quality test failed for charge (1+). > WARNING: Mixture model quality test failed for charge (2+). > WARNING: Mixture model quality test failed for charge (7+). > model complete after 27 iterations > INFO: Processing loop MixtureModel ... > > etc. > > If anyone has any ideas why I am running into this error with the new > build I'd be very grateful! > Thanks! > Alex > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/5436d7d4-3810-4af0-b32d-c432ebd91c5e%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/5436d7d4-3810-4af0-b32d-c432ebd91c5e%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D-CQZvCRrvpudOUob1SnomRpnN4MnLk9COZ-FOFKHkp1w%40mail.gmail.com.
