Hi David, Thanks very much for looking at this so quickly. I checked out the latest build, TPP v5.2.1-dev Flammagenitus, Build 202001280920-8004, and that has resolved the issue. Cheers, Alex
On Tuesday, January 28, 2020 at 12:29:05 PM UTC-8, David Shteynberg wrote: > > Hi Alex, > > Thanks for sharing your file. I have confirmed that the latest version of > the code (SVN revision 8004) has corrected this problem. Please update > your TPP software to latest SVN revision (or official release.) > > Cheers, > David > > On Tue, Jan 28, 2020 at 8:57 AM Alex Zelter <aze...@uw.edu <javascript:>> > wrote: > >> I'm running into the following error when trying to use xinteract to >> process Kojak 2.0 results. >> The command I'm running is: >> /usr/local/tpp/bin/xinteract -Ninteract.pep.xml -p0 -l1 -eT >> -D/path/to/database.fasta -PPM -OAPdp -drandom_ -ip ./kojak-output.pep.xml >> >> INFO: Processing xl MixtureModel ... >> PeptideProphet (TPP v5.2.1-dev Flammagenitus, Build 201908090730-7945 >> (Linux-x86_64)) AKeller@ISB >> read in 0 1+, 34 2+, 11290 3+, 7625 4+, 2948 5+, 874 6+, and 13 7+ >> spectra. >> Initialising statistical models ... >> Found 13541 Decoys, and 9243 Non-Decoys >> Iterations: DEBUG HERE ... >> ERROR: nan detected in NonParametricDistribution ... >> >> command "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml' >> MINPROB=0 PPM ACCMASS NONPARAM DECOYPROBS DECOY=random_" exited with >> non-zero exit code: 256 >> QUIT - the job is incomplete >> >> This was previously working for me using TPP v5.2.0-b1 Flammagenitus >> Pre-release Beta, Build 201809101205-7809 (Linux-x86_64)) >> >> INFO: Processing xl MixtureModel ... >> PeptideProphet (TPP v5.2.0-b1 Flammagenitus Pre-release Beta, Build >> 201809101205-7809 (Linux-x86_64)) AKeller@ISB >> read in 0 1+, 34 2+, 11290 3+, 7625 4+, 2948 5+, 874 6+, and 13 7+ >> spectra. >> Initialising statistical models ... >> Found 13541 Decoys, and 9243 Non-Decoys >> Iterations: .........10.........20...... >> WARNING: Mixture model quality test failed for charge (1+). >> WARNING: Mixture model quality test failed for charge (2+). >> WARNING: Mixture model quality test failed for charge (7+). >> model complete after 27 iterations >> INFO: Processing loop MixtureModel ... >> >> etc. >> >> If anyone has any ideas why I am running into this error with the new >> build I'd be very grateful! >> Thanks! >> Alex >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools...@googlegroups.com <javascript:>. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/5436d7d4-3810-4af0-b32d-c432ebd91c5e%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/5436d7d4-3810-4af0-b32d-c432ebd91c5e%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/fcefda8a-eb15-4275-a2c4-4e3b75d0328b%40googlegroups.com.
