The screenshot shows all that's in the command-line output sub-window. It 
stops while mapping precursors and gives no further diagnostic messages. 
Any reasons it would stop running?

On Monday, March 30, 2020 at 1:33:18 PM UTC-7, Luis wrote:
>
> Hi Lindsey,
>
> It seems that Kojak did not finish successfully, and it may be the reason 
> why there is no output file.  If you scroll down in the command-line output 
> sub-window (the one in your screenshot, just scroll down more), you should 
> be able to see diagnostic messages that may be helpful in troubleshooting 
> the issue.
>
> Cheers,
> --Luis
>
>
> On Fri, Mar 27, 2020 at 2:27 PM Lindsey Ulmer <ulmerli...@gmail.com 
> <javascript:>> wrote:
>
>> Hi,
>>
>> I've run Kojak with the same settings on other data files with no 
>> problem, but for some reason with this particular data file I keep getting 
>> the error that the pep.xml file cannot be found and am not sure why this 
>> one file would be different.
>>
>> Thanks!
>> Lindsey
>>
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