Hello, That is quite odd; Are you able to share a pepXML file so we can troubleshoot? You can contact me directly to arrange a file transfer. Thanks, --Luis
On Tue, Oct 18, 2022 at 12:21 PM 2kl...@gmail.com <2kl...@gmail.com> wrote: > Hi all, > > I am using the TPP v6.1.0 Parhelion, Build 202108271510 for analyzing > dimethylation following Comet (or MSFragger) search with the light label > set as fixed and the heavy mass difference as variable. Xpress settings > include mass tolerance of 20 ppmת a Minimum number of chromatogram points > needed for quantitation:3 and Number of isotopic peaks to sum is set to 0. > > When I open the interact.pep.xml file with the viewer and filter the > results based on probability, for some of the peptides there is a > discrepancy between the ratio shown in the pepXML and the one in the > XPressPeptideUpdateParser. The differences can be relatively large (for > example, 0.1 versus 1.5) > > Similar results are obtained if the Number of isotopic peaks to sum is > set to 1, 2 or 3. > > Can you please advise? > Many thanks, > OK > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CACyS9boUCp58cA0Hpi8obRg0xZUvUcJB3eSnDYFhWpCtTXM6CA%40mail.gmail.com.