Hi Luis, Sure. I don't have internet access all the time in the coming week but will send you a download link when possible. I should also mention that I should update that we upgrade to version TPP v6.2.0 Nacreous-dev, Build 202209191518-8727 and things a somewhat better. Thanks a lot.
On Sunday, October 30, 2022 at 1:41:41 AM UTC+3 Luis wrote: > Hello, > That is quite odd; Are you able to share a pepXML file so we can > troubleshoot? You can contact me directly to arrange a file transfer. > Thanks, > --Luis > > > On Tue, Oct 18, 2022 at 12:21 PM 2kl...@gmail.com <2kl...@gmail.com> > wrote: > >> Hi all, >> >> I am using the TPP v6.1.0 Parhelion, Build 202108271510 for analyzing >> dimethylation following Comet (or MSFragger) search with the light label >> set as fixed and the heavy mass difference as variable. Xpress settings >> include mass tolerance of 20 ppmת a Minimum number of chromatogram points >> needed for quantitation:3 and Number of isotopic peaks to sum is set to 0. >> >> When I open the interact.pep.xml file with the viewer and filter the >> results based on probability, for some of the peptides there is a >> discrepancy between the ratio shown in the pepXML and the one in the >> XPressPeptideUpdateParser. The differences can be relatively large (for >> example, 0.1 versus 1.5) >> >> Similar results are obtained if the Number of isotopic peaks to sum is >> set to 1, 2 or 3. >> >> Can you please advise? >> Many thanks, >> OK >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/adfd4610-6127-439f-b86f-43143cf8a7b8n%40googlegroups.com.
