Hi all. Thanks for resolving this error. To everyone else, this was user error on my part.
On Tuesday, November 29, 2022 at 10:31:29 AM UTC-8 cabarnes...@gmail.com wrote: > Hi all, > > Happy holidays! I have a new Eclipse in the lab and have been running my > Comet + TPP pipeline successfully on a lot of data downloaded from PRIDE > lately, but have run into an error with the new DDA data generated on the > Eclipse. It seems to be failing at the protein prophet step and the error > doesn't make much sense to me. Any idea what is going on? > > I'm running TPP 6.1 and Comet 2022.01 rev. 1 although the error below is > from the output of the Comet search through the TPP interface. I get a > similar error on the command line at the same step. > > > Here's the error message: > > WARNING: no data - output file will be empty > > command "C:/TPP/bin/ProteinProphet "interact.pep.xml" "interact.prot.xml"" > failed: Operation not permitted > > command "C:/TPP/bin/ProteinProphet "interact.pep.xml" "interact.prot.xml"" > exited with non-zero exit code: 1 > QUIT - the job is incomplete > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/1c7d886f-1c6e-4fa2-8c99-aab9aad8eeafn%40googlegroups.com.
