I guess I have another question about coverage: using ProtXMLViewer (which is similar to the output from ProteinProphet), the coverage values are almost always zero. For example, the example I show above has Obs/Dig of 82%, but is showing percent coverage to be zero in the ProteinProphet output. Any idea why? And can one get those Obs/Dig values?
On Tuesday, March 28, 2023 at 5:23:06 PM UTC-4 Yasir Ahmed wrote: > Never mind, got it with ProtXMLViewer.pl (duh). > > On Tuesday, March 28, 2023 at 5:03:14 PM UTC-4 Yasir Ahmed wrote: > >> Greetings Friends, >> >> Is there a command line tool within the TPP that can output sequence >> residue coverage percentages (Obs/Tot)? I can get those for individual >> proteins using the ProtXMLViewer GUI (see attached image), but would like >> to do this for every protein in my database. >> >> Cheers, >> Yasir >> >> [image: Screen Shot 2023-03-28 at 4.29.18 PM.png] >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/bcc98ae1-0f89-4472-9a66-f0eeed496d5dn%40googlegroups.com.
