David, would you be at all willing to post the code that you were using? I'll give "/" a shot in my path definitions.
On Tuesday, August 1, 2023 at 10:35:06 AM UTC-7 David Shteynberg wrote: > For what it is worth, yesterday I downloaded the PeptideSieve and ran it > on my system commandline to generate non-empty output files successfully. > I used '/' in my path definitions, but I am not sure it that makes a > difference. Good luck! > > On Tue, Aug 1, 2023 at 1:21 AM 'Luis Mendoza' via spctools-discuss < > spctools...@googlegroups.com> wrote: > >> Hello Sophie, >> I don't have much help to offer at this point, since we have not used >> that software in a very long time. But one thing I notice from your >> screenshots is that the folder/directory name appears to have a space in >> "MS User", which is not present in the commands, e.g. >> "C:\Users\msuser\TPP\...". Perhaps this is causing the errors you observe? >> Cheers, >> --Luis >> >> On Mon, Jul 31, 2023 at 4:54 PM sophie culos <sophi...@gmail.com> wrote: >> >>> Hello, >>> >>> I am trying to use peptideSieve for an in silico digestion to identify >>> proteotypic peptides for MALDI. >>> >>> I've attached a screenshot of what I've been inputting into the command >>> line and the error I've been consistently getting. The output file is >>> always blank, and I'm not sure how to proceed. >>> >>> Any help would be very much appreciated! >>> >>> Cheers, >>> Sophie >>> [image: peptideSieve error.PNG] >>> >>> >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/3017c88a-3ac5-4c9d-a8f1-34e9da686575n%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/spctools-discuss/3017c88a-3ac5-4c9d-a8f1-34e9da686575n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/CACyS9brV76SC0pD2K8wNwvB8xkf1dGwM2%2BCc-kgDWeOxTb89uw%40mail.gmail.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/CACyS9brV76SC0pD2K8wNwvB8xkf1dGwM2%2BCc-kgDWeOxTb89uw%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/9523f77b-7758-42fd-98fc-5211c0b255c8n%40googlegroups.com.
