Awesome, thank you so much! On Tuesday, November 14, 2023 at 3:47:45 PM UTC-5 David Shteynberg wrote:
> Hello Iryna, > > The xinteract tool in the TPP, accessed in Petunia interface in [TPP > Tools] -> [Analyze peptides]) , the option -PREC can be specified in the > [PeptideProphet Options] -> [Enter additional options to pass directly to > the command-line (expert use only!)]. This option will record > precursor_intensity for each PSM in the pepXML file. You can then add this > column in PepXMLViewer and it should be populated with parent intensities > from the mzML file. > > Cheers! > -David > > On Tue, Nov 14, 2023 at 12:39 PM Iryna Abramchuk <iryna....@gmail.com> > wrote: > >> Thank you! Do you know if there is any way to extract the precursor peak >> intensity with XPRESS (or other TPP tools)? >> >> On Tuesday, November 7, 2023 at 4:32:25 PM UTC-5 Jimmy Eng wrote: >> >>> "peak_intensity" is the maximum peak intensity of the ion chromatogram. >>> >>> On Tue, Nov 7, 2023 at 1:00 PM Iryna Abramchuk <iryna....@gmail.com> >>> wrote: >>> >>>> Hello all! >>>> I am using XPRESS in label-free mode (TPPv6.1.0), and interested in the >>>> "peak_intensity" output value. I was just looking to confirm whether >>>> "peak_intensity" is the precursor peak intensity, or if it's the maximum >>>> peak intensity of the ion chromatogram? >>>> Thank you >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/ea66065e-0b21-43cd-9f00-703ad9e8d3f7n%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/spctools-discuss/ea66065e-0b21-43cd-9f00-703ad9e8d3f7n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discu...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/9c3553a8-a00d-4e0b-97f1-065b7171f0c6n%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/9c3553a8-a00d-4e0b-97f1-065b7171f0c6n%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/0a22524d-8b40-4a3f-9a88-1c6dfe97f25bn%40googlegroups.com.
