Happy ending to this one. The source_suffix value in conf.py was accidentally set to "md" (minus the period). So Sphinx was lopping off the MD on the end of pathnames and trying to open them!
On Wednesday, February 16, 2022 at 3:39:13 PM UTC-5 Tom Diaz wrote: > With Sphinx 3.5.4, I am seeing pathnames apparently parsed incorrectly. > > Example: > > Index file contains > > .. toctree:: > :maxdepth: 2 > > binding_free_energies/binding_free_energies > general_md/general_md > protein-ligand_md/protein-ligand_md > > When this is processed, the first entry (bind_free_energies) works fine. > > The other two generate a sphinx warning about "nonexisting files" that > shows a truncated version of the pathname, such as > > "general_md/general_" > > (missing the MD). > > If anyone has seen this before I'd appreciate some insight. > > > -- You received this message because you are subscribed to the Google Groups "sphinx-users" group. To unsubscribe from this group and stop receiving emails from it, send an email to sphinx-users+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sphinx-users/05492802-817b-479f-af2b-d97db3b45ea6n%40googlegroups.com.
