I found the problem now - the __hash__() function I had did not return
an integer, it returned a tuple of the composite primary key. I
changed it now and it works, thanks for your help!

On Jul 4, 8:50 am, Adrian <adr...@schreyer.me> wrote:
> Yes, the __eq__() and __hash__() functions are overridden to compare
> the primary keys (e.g. self.id==other.id, or hash(self.id)). The orm
> query works as expected once I remove them from the Entity class
> definition.
>
> On Jul 1, 4:03 pm, Michael Bayer <mike...@zzzcomputing.com> wrote:
>
>
>
>
>
>
>
> > does your Entity class have some overridden __eq__(), __cmp__(), __hash__() 
> > on it ?   I think there might be an issue here but I need a lot more 
> > specifics.
>
> > On Jul 1, 2011, at 6:34 AM, Adrian wrote:
>
> > > I just tested it and session.execute(query.statement) returns the
> > > proper resultset. The 'similarity' functions returns REAL.
>
> > > ---
>
> > > In [13]: query.all()
> > > ---------------------------------------------------------------------------
> > > TypeError                                 Traceback (most recent call
> > > last)
>
> > > /usr/local/lib/python2.7/dist-packages/sqlalchemy/orm/query.pyc in
> > > all(self)
> > >   1675
> > >   1676         """
> > > -> 1677         return list(self)
> > >   1678
> > >   1679     @_generative(_no_clauseelement_condition)
>
> > > /usr/local/lib/python2.7/dist-packages/sqlalchemy/orm/query.pyc in
> > > instances(self, cursor, _Query__context)
> > >   1916
> > >   1917             if filter:
> > > -> 1918                 rows = filter(rows)
> > >   1919
> > >   1920             if context.refresh_state and self._only_load_props
> > > \
>
> > > /usr/local/lib/python2.7/dist-packages/sqlalchemy/util/
> > > _collections.pyc in unique_list(seq, hashfunc)
> > >    594     if not hashfunc:
> > >    595     return [x for x in seq
> > > --> 596                 if x not in seen
> > >    597                 and not seen.__setitem__(x, True)]
> > >    598     else:
>
> > > TypeError: an integer is required
>
> > > # the last value in the row is the similarity value
> > > In [14]: session.execute(query).fetchall()
> > > Out[14]:
> > > [(10581, u'STI', u'STI', None, u'4-[(4-methylpiperazin-1-yl)methyl]-N-
> > > [4-methyl-3-[[4-(3-pyridyl)pyrimidin-2-yl]amino]phenyl]benzamide',
> > > None, None, u'Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)NC(=O)c4ccc(cc4)C[NH
> > > +]5CC[NH+](CC5)C', 495.619, 37, 29, 8, 0, 0.275862, 2, 2, 0, 41, 8, 5,
> > > 4, 0, 0, 88.68, 2.588, 0.241379, True, False, False, False, False,
> > > False, False, False, False, False, 1.0),
> > > (8099, u'MPZ', u'MPZ', None, u'4-[(4-methylpiperazin-1-yl)methyl]-N-
> > > [3-[[4-(3-pyridyl)pyrimidin-2-yl]amino]phenyl]benzamide', None, None,
> > > u'C[NH+]1CC[NH+](CC1)Cc2ccc(cc2)C(=O)Nc3cccc(c3)Nc4nccc(n4)c5cccnc5',
> > > 481.592, 36, 28, 8, 0, 0.285714, 2, 2, 0, 40, 8, 5, 4, 0, 0, 88.68,
> > > 2.292, 0.214286, True, False, False, False, False, False, False,
> > > False, False, False, 0.811594202898551),
> > > (9593, u'PRC', u'PRC', None, u'N-[4-methyl-3-[[4-(3-
> > > pyridyl)pyrimidin-2-yl]amino]phenyl]pyridine-3-carboxamide', None,
> > > None, u'Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccnc4', 382.418, 29,
> > > 22, 7, 0, 0.318182, 0, 0, 0, 32, 6, 4, 4, 0, 0, 92.69, 2.143,
> > > 0.0454545, True, False, False, False, False, False, False, False,
> > > False, False, 0.691176470588235),
> > > (5653, u'G6G', u'G6G', None, u'N-[3-[[3-[4-(4-methoxyanilino)-1,3,5-
> > > triazin-2-yl]-2-pyridyl]amino]-4-methyl-phenyl]-4-[(4-
> > > methylpiperazin-1-yl)methyl]benzamide', None, None,
> > > u'Cc1ccc(cc1Nc2c(cccn2)c3ncnc(n3)Nc4ccc(cc4)OC)NC(=O)c5ccc(cc5)C[NH
> > > +]6CC[NH+](CC6)C', 617.743, 46, 35, 11, 0, 0.314286, 2, 2, 0, 51, 11,
> > > 6, 5, 0, 0, 122.83, 3.668, 0.228571, True, False, False, False, False,
> > > False, False, False, False, False, 0.619047619047619),
> > > (1153, u'406', u'406', None, u'4-[[(1R,3R)-3-
> > > (dimethylamino)pyrrolidin-1-yl]methyl]-N-[4-methyl-3-[(4-pyrimidin-5-
> > > ylpyrimidin-2-yl)amino]phenyl]-3-(trifluoromethyl)benzamide', None,
> > > None, u'Cc1ccc(cc1Nc2nccc(n2)c3cncnc3)NC(=O)c4ccc(c(c4)C(F)(F)F)C[N@@H
> > > +]5CC[C@@H](C5)[NH+](C)C', 578.631, 42, 30, 12, 3, 0.4, 2, 2, 0, 46,
> > > 10, 5, 4, 0, 0, 101.57, 3.187, 0.3, True, False, False, False, False,
> > > False, False, False, False, False, 0.526881720430108),
> > > (8552, u'NIL', u'NIL', None, u'4-methyl-N-[3-(4-methylimidazol-1-
> > > yl)-5-(trifluoromethyl)phenyl]-3-[[4-(3-pyridyl)pyrimidin-2-
> > > yl]amino]benzamide', None, None,
> > > u'Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)Nc4cc(cc(c4)n5cc(nc5)C)C(F)(F)F',
> > > 529.516, 39, 28, 11, 3, 0.392857, 0, 0, 0, 43, 8, 5, 5, 0, 0, 97.62,
> > > 3.771, 0.107143, True, False, False, False, False, False, False,
> > > False, False, False, 0.50561797752809)]
>
> > > On Jun 30, 3:27 pm, Michael Bayer <mike...@zzzcomputing.com> wrote:
> > >> On Jun 30, 2011, at 9:23 AM, Adrian wrote:
>
> > >>> SQAlchemy 0.7.1 / pyscopg 2.2.1 / PostgreSQL 9.0
> > >>> ---------------------------------------------------------------------------
>
> > >>> I have a weird problem with orm queries that contain custom functions,
> > >>> in this case from postgres contrib modules. When I do a query like
> > >>> this
>
> > >>> session.query(Entity, func.similarity(Entity.string,
> > >>> 'querystring')).all() # postgres pg_trgm extension
>
> > >>> I will get the error below. However, when I specify one or all the
> > >>> columns of the Entity individually it works. It also works if the
> > >>> function is in the .order_by() clause.
>
> > >>> Any ideas where the problem could come from?
>
> > >> this seems like it has to do with the type of object being returned from 
> > >> psycopg2, as the Query runs the rows through a uniquing function that 
> > >> uses sets, maybe a comparison is emitting that TypeError.   The stack 
> > >> trace doesn't quite make it clear.   It would be interesting to see what 
> > >> session.execute(myquery.statement) sends back in the result rows.   (I 
> > >> haven't looked up the "SIMILARITY" function in the PG docs yet to see 
> > >> what it returns).
>
> > >>> -----
>
> > >>> /usr/local/lib/python2.7/dist-packages/sqlalchemy/orm/query.pyc in
> > >>> all(self)
> > >>>   1675
> > >>>   1676         """
> > >>> -> 1677         return list(self)
> > >>>   1678
> > >>>   1679     @_generative(_no_clauseelement_condition)
>
> > >>> /usr/local/lib/python2.7/dist-packages/sqlalchemy/orm/query.pyc in
> > >>> instances(self, cursor, _Query__context)
> > >>>   1916
> > >>>   1917             if filter:
> > >>> -> 1918                 rows = filter(rows)
> > >>>   1919
> > >>>   1920             if context.refresh_state and self._only_load_props
> > >>> \
>
> > >>> /usr/local/lib/python2.7/dist-packages/sqlalchemy/util/
> > >>> _collections.pyc in unique_list(seq, hashfunc)
> > >>>    594     if not hashfunc:
> > >>>    595     return [x for x in seq
> > >>> --> 596                 if x not in seen
> > >>>    597                 and not seen.__setitem__(x, True)]
> > >>>    598     else:
>
> > >>> TypeError: an integer is required
>
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