Ok,

I have managed to get rid of the problem, but I'm don't like what is 
happening.
Solution: remove a secondary relation from the model:

model = relationship("Model", secondary='item_group', uselist=False)


After this, the following code does do a proper delete of the items:

for it in self.session.query(ItemMeta).filter_by(item_group=item_group).all():
    if type(it) == ItemMeta:
        item_group.items.remove(it)
        self.session.delete(it)
self.session.commit()


However, things are still not ideal. The following should work but doesn't:

for item in item_group.items:
   self.session.delete(item)

Then only half of the item get deleted, which is a bit weird.

Anybody any thoughts on this? Why does a secondary relation of this kind of 
effect on a delete?

Kinde regards,
Nacho

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