Hi, while trying to install and sqlite package for R statistical language (Rsqlite) I came across I bug: i could not compile the package with the intel compiler ICC / ICPC. You can find the whole discussion (and the solution) here - https://github.com/rstats-db/RSQLite/issues/223
However, the maintainer suggested me to take the issue upstream to the sqlite mailing list. Therefore, here I am. The diagnosis of the problem is: The undefined symbol, __builtin_mul_overflow, is a GCC primitive. SQLite has the option to call it directly. It's supposed to disable itself through a some pre-processor checks if it's not supported by the current compiler, but I believe icpc defines some pre-processor flags the same as GCC for compatibility. SQLite does check for SQLITE_DISABLE_INTRINSIC to disable calling these, regardless of compiler-defined pre-processor directives. I'd suggest adding -DSQLITE_DISABLE_INTRINSIC to the build (I believe in src/Makevars <https://github.com/rstats-db/RSQLite/blob/master/src/Makevars>). ... and the solution to the specific RSQLite issue is a minor change to the source code (see https://github.com/rstats-db/RSQLite/pull/224/files). Below, instead, you can find the compilation log of sqlite with ICC under Archlinux ==> Making package: sqlite 3.18.0-1 (sab 8 lug 2017, 16.52.07, CEST) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Retrieving sources... -> Found sqlite-src-3180000.zip -> Found sqlite-doc-3180000.zip -> Found license.txt ==> Validating source files with sha1sums... sqlite-src-3180000.zip ... Passed sqlite-doc-3180000.zip ... Passed license.txt ... Passed ==> Extracting sources... -> Extracting sqlite-src-3180000.zip with bsdtar -> Extracting sqlite-doc-3180000.zip with bsdtar ==> Starting prepare()... ==> Removing existing $pkgdir/ directory... ==> Starting build()... checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... icc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether icc accepts -g... yes checking for icc option to accept ISO C89... none needed checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by icc... /usr/lib/hardening-wrapper/bin/ld checking if the linker (/usr/lib/hardening-wrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/lib/hardening-wrapper/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from icc object... ok checking how to run the C preprocessor... icc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if icc supports -fno-rtti -fno-exceptions... yes checking for icc option to produce PIC... -fPIC -DPIC checking if icc PIC flag -fPIC -DPIC works... yes checking if icc static flag -static works... yes checking if icc supports -c -o file.o... yes checking if icc supports -c -o file.o... (cached) yes checking whether the icc linker (/usr/lib/hardening-wrapper/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for a BSD-compatible install... /usr/bin/install -c checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for intptr_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uintptr_t... yes checking for sys/types.h... (cached) yes checking for stdlib.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for fdatasync... yes checking for gmtime_r... yes checking for isnan... yes checking for localtime_r... yes checking for localtime_s... no checking for malloc_usable_size... yes checking for strchrnul... yes checking for usleep... yes checking for utime... yes checking for pread... ^[[Byes checking for pread64... yes checking for pwrite... yes checking for pwrite64... yes checking for tclsh8.6... tclsh8.6 configure: Version set to 3.18 configure: Release set to 3.18.0 configure: Version number set to 3018000 checking whether to support threadsafe operation... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_mutexattr_init... none required checking whether to support shared library linked as release mode or not... no checking whether to use an in-ram database for temporary tables... no checking if executables have the .exe suffix... unknown checking for Tcl configuration... found /usr/lib/tclConfig.sh checking for existence of /usr/lib/tclConfig.sh... loading checking for library containing readline... no checking for library containing tgetent... no checking for readline in -lreadline... no checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking for /usr/include/readline.h... no checking for /usr/include/readline/readline.h... yes checking for library containing fdatasync... none required checking for library containing dlopen... none required checking whether to support MEMSYS5... no checking whether to support MEMSYS3... no checking for library containing log... none required checking for library containing log... (cached) none required configure: creating ./config.status config.status: creating Makefile config.status: creating sqlite3.pc config.status: creating config.h config.status: config.h is unchanged config.status: executing libtool commands ./libtool --mode=link icc -DSQLITE_SECURE_DELETE -DSQLITE_MAX_VARIABLE_NUMBER=250000 -fast -pipe -gcc -DSQLITE_OS_UNIX=1 -I. -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/src -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/rtree -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/icu -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/fts3 -I/va r/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/async -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/session -D_HAVE_SQLITE_CONFIG_H -DBUILD_sqlite -DNDEBUG -I/usr/include - DSQLITE_THREADSAFE=1 -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS4 -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_COLUMN_METADATA=1 -DSQLITE_ENABLE_U NLOCK_NOTIFY -DSQLITE_ENABLE_DBSTAT_VTAB=1 -DSQLITE_ENABLE_FTS3_TOKENIZER=1 -Wl,-O1,--sort-common,--as-needed,-z,relro,--hash-style=gnu -DHAVE_READLINE=1 -I/usr/include/readlin e -DHAVE_EDITLINE=0 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_FTS4 -DSQLITE_ENABLE_EXPLAIN_COMMENTS -DSQLITE_ENABLE_UNKNOWN_SQL_FUNCTION -o sqlite3 \ /var/tmp/makepkg/sqlite/src/sqlite-src-3180000/src/shell.c sqlite3.c \ -lpthread -rpath "/usr/lib" libtool: link: icc -DSQLITE_SECURE_DELETE -DSQLITE_MAX_VARIABLE_NUMBER=250000 -fast -pipe -gcc -DSQLITE_OS_UNIX=1 -I. -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/src -I/var/t mp/makepkg/sqlite/src/sqlite-src-3180000/ext/rtree -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/icu -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/fts3 -I/var/tmp/ma kepkg/sqlite/src/sqlite-src-3180000/ext/async -I/var/tmp/makepkg/sqlite/src/sqlite-src-3180000/ext/session -D_HAVE_SQLITE_CONFIG_H -DBUILD_sqlite -DNDEBUG -I/usr/include -DSQLITE_ THREADSAFE=1 -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS4 -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_COLUMN_METADATA=1 -DSQLITE_ENABLE_UNLOCK_NO TIFY -DSQLITE_ENABLE_DBSTAT_VTAB=1 -DSQLITE_ENABLE_FTS3_TOKENIZER=1 -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,--hash-style=gnu -DHAVE_READLINE=1 -I/usr/includ e/readline -DHAVE_EDITLINE=0 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_FTS4 -DSQLITE_ENABLE_EXPLAIN_COMMENTS -DSQLITE_ENABLE_UNKNOWN_SQL_FUNCTION -o sqlite3 /var/tmp/makepkg/sqlite/sr c/sqlite-src-3180000/src/shell.c sqlite3.c -lpthread -Wl,-rpath -Wl,/usr/lib ipo: warning #11021: unresolved write_history Referenced in /tmp/ipo_iccqblmcn.o ipo: warning #11021: unresolved stifle_history Referenced in /tmp/ipo_iccqblmcn.o ipo: warning #11021: unresolved read_history Referenced in /tmp/ipo_iccqblmcn.o ipo: warning #11021: unresolved add_history Referenced in /tmp/ipo_iccqblmcn.o ipo: warning #11021: unresolved readline Referenced in /tmp/ipo_iccqblmcn.o /tmp/ipo_iccqblmcn.o: In function `main': ipo_out.c:(.text+0x19af): warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /tmp/ipo_iccqblmcn.o: In function `unixDlOpen': ipo_out.c:(.text+0x13e5b9): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /tmp/ipo_iccqblmcn.o: In function `main': ipo_out.c:(.text+0x1220): undefined reference to `read_history' ipo_out.c:(.text+0x1242): undefined reference to `stifle_history' ipo_out.c:(.text+0x124a): undefined reference to `write_history' /tmp/ipo_iccqblmcn.o: In function `process_input': ipo_out.c:(.text+0x4b840): undefined reference to `readline' ipo_out.c:(.text+0x4b85a): undefined reference to `add_history' /tmp/ipo_iccqblmcn.o: In function `sqlite3VdbeExec': ipo_out.c:(.text+0x7dd71): undefined reference to `__builtin_add_overflow' ipo_out.c:(.text+0x8135a): undefined reference to `__builtin_mul_overflow' ipo_out.c:(.text+0x813d3): undefined reference to `__builtin_sub_overflow' ipo_out.c:(.text+0x83e24): undefined reference to `__builtin_add_overflow' /tmp/ipo_iccqblmcn.o: In function `sumStep': ipo_out.c:(.text+0x12632d): undefined reference to `__builtin_add_overflow' make: *** [Makefile:596: sqlite3] Error 1 ==> ERROR: A failure occurred in build(). Aborting... Thank you very much for your attention. R _______________________________________________ sqlite-users mailing list sqlite-users@mailinglists.sqlite.org http://mailinglists.sqlite.org/cgi-bin/mailman/listinfo/sqlite-users
