On 6 Aug 2012, at 7:48pm, Doug Currie <doug.cur...@gmail.com> wrote:

> ~ e$ /usr/local/bin/sqlite3 :memory: 'SELECT sqlite_source_id()'
> 2012-05-14 01:41:23 8654aa9540fe9fd210899d83d17f3f407096c004

I think this copy has been installed by something else.  I don't think it comes 
with Apple's distribution of Mountain Lion.  If this is the file which is being 
executed by default (in other words, if that's the file reported by the command 
'which sqlite3' on your system) then this may be the cause of your problem.

Simon.
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