This is an example that the ANALYZE command leads to a wrong query plan for 
RTrees:

CREATE TABLE A (ID INTEGER PRIMARY KEY, Latitude, Longitude, Altitude);
CREATE VIRTUAL TABLE B USING RTree (ID, FromLatitude, TillLatitude, 
FromLongitude,TillLongitude);
INSERT INTO A VALUES(1,0,0,0);
INSERT INTO A VALUES(2,1,1,1);
INSERT INTO B VALUES(1,0,0,0,0);
INSERT INTO B VALUES(2,1,1,1,1);

Without an analyze command the query plan seems to be OK:
EXPLAIN QUERY PLAN SELECT COUNT(*) FROM A,B WHERE (A.ID=B.ID) AND 
(B.FromLongitude > 5) AND (B.TillLongitude < 10);
0|0|1|SCAN TABLE B VIRTUAL TABLE INDEX 2:EcCd (~0 rows)
0|1|0|SEARCH TABLE A USING INTEGER PRIMARY KEY (rowid=?) (~1 rows)

After running the ANALYZE command the query plan has changed and the result is 
a worse query plan than before:
ANALYZE;
EXPLAIN QUERY PLAN SELECT COUNT(*) FROM A,B WHERE (A.ID=B.ID) AND 
(B.FromLongitude > 5) AND (B.TillLongitude < 10);
0|0|0|SCAN TABLE A (~2 rows)
0|1|1|SCAN TABLE B VIRTUAL TABLE INDEX 1: (~0 rows)

Regards,
Hartwig

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