Thank you very much once again Tobias. It does fix this problem ! Could be nice to update the "http://download.walware.de/rj-2.0"; with the new version ?
Best, Karl On Thu, Dec 18, 2014 at 9:56 PM, Tobias Verbeke <[email protected]> wrote: > > Hi Karl, > > Thanks for your report. This has been fixed some time ago in > > http://download.walware.de/rj-2.0/src/contrib/rj_2.0.3-1.tar.gz > > Best, > Tobias > > On Thu, Dec 18, 2014 at 2:29 PM, Karl Forner - Quartz Bio < > [email protected]> wrote: > >> First reported here (last post): >> https://support.bioconductor.org/p/63150/ >> >> This: >> >> require(org.Hs.eg.db) >> >> crashes inside StaET rj console, but not in the standard console. >> >> Error message: >> Error: org.Hs.egPFAM is defunct. Please use select() if you need access to >> PFAM or PROSITE accessions. >> # >> # A fatal error has been detected by the Java Runtime Environment: >> # >> # SIGSEGV (0xb) at pc=0x00007fab1718dfd2, pid=40, tid=140371141064448 >> # >> # JRE version: OpenJDK Runtime Environment (7.0_65-b32) (build >> 1.7.0_65-b32) >> # Java VM: OpenJDK 64-Bit Server VM (24.65-b04 mixed mode linux-amd64 >> compressed oops) >> # Problematic frame: >> # V [libjvm.so+0x2a2fd2] >> >> >> Experienced with R-3.1.1 on linux and on boot2docker on macOsX. >> StatET 3.4.0b201407171807E43sw >> Eclise 4.4.0 >> >> I'll try to dig a little to see what exact instruction crashes the >> console. >> >> Best, >> Karl >> >> >> _______________________________________________ >> StatET-user mailing list >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/statet-user >> >
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