All binaries of rj_2.0.3-1 are available now too.

Regards,
Stephan


Karl Forner - Quartz Bio schrieb am 2014-12-19 um 11:38:
Thank you very much once again Tobias.
It does fix this problem !
Could be nice to update the "http://download.walware.de/rj-2.0"; with the
new version ?

Best,
Karl

On Thu, Dec 18, 2014 at 9:56 PM, Tobias Verbeke
<[email protected] <mailto:[email protected]>> wrote:

    Hi Karl,

    Thanks for your report. This has been fixed some time ago in

    http://download.walware.de/rj-2.0/src/contrib/rj_2.0.3-1.tar.gz

    Best,
    Tobias

    On Thu, Dec 18, 2014 at 2:29 PM, Karl Forner - Quartz Bio
    <[email protected] <mailto:[email protected]>> wrote:

        First reported here (last post):
        https://support.bioconductor.org/p/63150/

        This:

        require(org.Hs.eg.db)

        crashes inside StaET rj console, but not in the standard console.

        Error message:
        Error: org.Hs.egPFAM is defunct. Please use select() if you need
        access to
           PFAM or PROSITE accessions.
        #
        # A fatal error has been detected by the Java Runtime Environment:
        #
        #  SIGSEGV (0xb) at pc=0x00007fab1718dfd2, pid=40,
        tid=140371141064448
        #
        # JRE version: OpenJDK Runtime Environment (7.0_65-b32) (build
        1.7.0_65-b32)
        # Java VM: OpenJDK 64-Bit Server VM (24.65-b04 mixed mode
        linux-amd64 compressed oops)
        # Problematic frame:
        # V  [libjvm.so+0x2a2fd2]


        Experienced with R-3.1.1 on linux and on boot2docker on macOsX.
        StatET 3.4.0b201407171807E43sw
        Eclise 4.4.0

        I'll try to dig a little to see what exact instruction crashes
        the console.

        Best,
        Karl


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