Hi Mike This definitly sounds like timing and certain diesels will drive the mechanical fuel pump with a tapered collet. Since your engine is quite new, I would suspect that the jam nut has either slightly loosened or was not tight enough from the factory, allowing the pump to turn on the taper slightly out of sync. Then it's quite possible for the pump to lock itself again in the new position. This excact same thing happened on my 95 Dodge cummins . There is no keyway on the shaft. Alighnment proceedure goes as follows: A) find piston TDC on the power stroke, B) measure the injection plunger height at its most high position and lock the fuel pump in that position C) finally install the drive gear or sproket "what have you" on the taper and lock it TIGHT with the jam-nut. Might be easier for ya to get the exact instructions from the dealer or a local fuel pump shop. Good luck!! p.s. Dont forget to unlock the fuel pump LOL b-4 cranking!!! Swc. :)
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