Thank you all for searching the origin of this issue

I saw the log of my server while you were sending some queries. Here is a 
snapshot:

    com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader 
error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
    Message: Content is not allowed in prolog.
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown 
Source)
        at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
 Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown 
Source)
        at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
 Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown 
Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
        at java.lang.Thread.run(Unknown Source)
    Caused by: javax.xml.stream.XMLStreamException: ParseError at 
[row,col]:[1,1]
    Message: Content is not allowed in prolog.
        at 
com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown Source)
        at com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown 
Source)
        ... 22 more
    name is myGrid
    name is myGrid
    name is myGrid
    name is myGrid
    com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader 
error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
    Message: Premature end of file.
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown 
Source)
        at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
 Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown 
Source)
        at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
 Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown 
Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
        at java.lang.Thread.run(Unknown Source)
    Caused by: javax.xml.stream.XMLStreamException: ParseError at 
[row,col]:[1,1]
    Message: Premature end of file.
        at 
com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown Source)
        at com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown 
Source)
        ... 22 more
    com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader 
error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
    Message: Premature end of file.
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown 
Source)
        at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown 
Source)
        at 
com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
 Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown 
Source)
        at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
        at 
com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown 
Source)
        at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown 
Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
 Source)
        at 
com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown 
Source)
        at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
        at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown 
Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
        at java.lang.Thread.run(Unknown Source)
    Caused by: javax.xml.stream.XMLStreamException: ParseError at 
[row,col]:[1,1]
    Message: Premature end of file.
        at 
com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown Source)
        at com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown 
Source)
        ... 22 more
    name is myGrid




> Could you try using another HTTP server implementation (using
> something like Tomcat or Jetty) instead of using endpoint.publish()
> ..?

I don't think Tomcat or Jetty can automatically publish a WS using the  
javax.jws.* annotations but Glassfish can do this.
It may take some time before I can set-up a server. I'll keep you informed. Do 
you think this is a bug from java ?
(It would be nice if we could using this javax.jws API to create some simple WS 
for bioinformatics...)

Pierre









.



      

------------------------------------------------------------------------------
_______________________________________________
taverna-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/taverna-users
Documentation: http://www.mygrid.org.uk/usermanual1.7/
FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices

Reply via email to