Hi,
Your wsdl indicates that your web service is based upon RPC/Literal
which Taverna doesn't support. RPC/Literal is highly discouraged for
interoperability reasons. You should change it to wrapped doc/literal or
RPC/Encoded.
Stuart
Pierre LINDENBAUM wrote:
> Thank you all for searching the origin of this issue
>
> I saw the log of my server while you were sending some queries. Here is a
> snapshot:
>
> com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader
> error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
> Message: Content is not allowed in prolog.
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown
> Source)
> at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown
> Source)
> at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown
> Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
> at java.lang.Thread.run(Unknown Source)
> Caused by: javax.xml.stream.XMLStreamException: ParseError at
> [row,col]:[1,1]
> Message: Content is not allowed in prolog.
> at
> com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown Source)
> ... 22 more
> name is myGrid
> name is myGrid
> name is myGrid
> name is myGrid
> com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader
> error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
> Message: Premature end of file.
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown
> Source)
> at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown
> Source)
> at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown
> Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
> at java.lang.Thread.run(Unknown Source)
> Caused by: javax.xml.stream.XMLStreamException: ParseError at
> [row,col]:[1,1]
> Message: Premature end of file.
> at
> com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown Source)
> ... 22 more
> com.sun.xml.internal.ws.streaming.XMLStreamReaderException: XML reader
> error: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[1,1]
> Message: Premature end of file.
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.wrapException(Unknown
> Source)
> at com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextContent(Unknown
> Source)
> at
> com.sun.xml.internal.ws.streaming.XMLStreamReaderUtil.nextElementContent(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.StreamSOAPCodec.decode(Unknown
> Source)
> at com.sun.xml.internal.ws.encoding.SOAPBindingCodec.decode(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.decodePacket(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter.access$500(Unknown Source)
> at
> com.sun.xml.internal.ws.transport.http.HttpAdapter$HttpToolkit.handle(Unknown
> Source)
> at com.sun.xml.internal.ws.transport.http.HttpAdapter.handle(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handleExchange(Unknown
> Source)
> at
> com.sun.xml.internal.ws.transport.http.server.WSHttpHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.AuthFilter.doFilter(Unknown Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange$LinkHandler.handle(Unknown
> Source)
> at com.sun.net.httpserver.Filter$Chain.doFilter(Unknown Source)
> at sun.net.httpserver.ServerImpl$Exchange.run(Unknown Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown
> Source)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
> at java.lang.Thread.run(Unknown Source)
> Caused by: javax.xml.stream.XMLStreamException: ParseError at
> [row,col]:[1,1]
> Message: Premature end of file.
> at
> com.sun.org.apache.xerces.internal.impl.XMLStreamReaderImpl.next(Unknown
> Source)
> at
> com.sun.xml.internal.ws.util.xml.XMLStreamReaderFilter.next(Unknown Source)
> ... 22 more
> name is myGrid
>
>
>
>
>
>> Could you try using another HTTP server implementation (using
>> something like Tomcat or Jetty) instead of using endpoint.publish()
>> ..?
>>
>
> I don't think Tomcat or Jetty can automatically publish a WS using the
> javax.jws.* annotations but Glassfish can do this.
> It may take some time before I can set-up a server. I'll keep you informed.
> Do you think this is a bug from java ?
> (It would be nice if we could using this javax.jws API to create some simple
> WS for bioinformatics...)
>
> Pierre
>
>
>
>
>
>
>
>
>
> .
>
>
>
>
>
> ------------------------------------------------------------------------------
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> [email protected]
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> Documentation: http://www.mygrid.org.uk/usermanual1.7/
> FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
> Biological Services:
> http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
>
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