Sorry! taverna.sourceforge.net forwards the download request to
mygrid.org.uk site which means that I have the right copy of the software!!
regards,
Omer Alvi
On Thu, Jun 4, 2009 at 3:49 PM, Omer Alvi <[email protected]> wrote:
> Dear Ian, Stian
>
> Many thanks for your help. The workflow is attached with the email. It was
> developed at University of Bath UK and probably you are already familiar
> with this work. Regarding the inputs and outputs, the workflow starts with
> popping up windows(file input) for the selection of appropriate input files.
> I can see the pop up windows for the files selection when I run it with
> Taverna version 1.7.1. But in case of Taverna version 2.0 even the pop up
> windows do not appear suggesting that the workflow simply did not run.
>
> Stian, I downloaded Taverna 2.0 from taverna.sourceforge.net. (rings the
> bell?) I 'll download it again from mygrid.org.uk and yes, it would be
> interesting to try that with Taverna 2.1 beta.
>
> Best regards,
>
> Omer Alvi
>
>
> Date: Thu, 4 Jun 2009 08:12:04 +0100
> From: Stian Soiland-Reyes <[email protected]>
> Subject: Re: [Taverna-users] problem in executing workflow using
> Taverna 2.0
> To: [email protected]
> Message-ID:
> <[email protected]>
> Content-Type: text/plain; charset=UTF-8
>
> On Mon, Jun 1, 2009 at 23:29, Omer Alvi <[email protected]> wrote:
>
> > Exception in thread "AWT-EventQueue-0" java.lang.ClassCastException:
> > net.sf.tave
> > rna.t2.workflowmodel.impl.DataflowOutputPortImpl$1 cannot be cast to
> > net.sf.tave
> > rna.t2.workflowmodel.ProcessorPort
>
>
> As this is an odd error - could you double-check that you are using
> Taverna 2.0 downloaded from
> http://www.mygrid.org.uk/tools/taverna/taverna-2-0/download-taverna-2-0/
>
> and that you are running it by starting run.bat ?
>
>
> You could also try with recently announced 2.1 beta 1 to see if
> there's any difference, see
> http://www.myexperiment.org/packs/60
>
>
> As Ian posted, it would be most helpful to the team if you could
> provide us with the workflow that you can't run (with example inputs
> and it's expected outputs), and we can have a try as well :-)
>
> --
> Stian Soiland-Reyes, myGrid team
> School of Computer Science
> The University of Manchester
>
> Date: Wed, 3 Jun 2009 10:44:38 +0100
> From: Ian Dunlop <[email protected]>
> Subject: Re: [Taverna-users] problem in executing workflow using
> Taverna 2.0
> To: [email protected]
> Message-ID: <[email protected]>
> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
>
> Hello,
>
> Sorry to hear you have had problems. Could you post a copy of your
> workflow and we can take a closer look. It is possible that it is a
> problem with version 2.0, we will soon be releasing 2.1 which should
> fix 'most' of the problems with opening 1.7 workflows.
>
> Cheers,
>
> Ian
>
> Ian Dunlop
> myGrid team
> School of Computer Science
> University of Manchester
>
>
>
> On 1 Jun 2009, at 23:29, Omer Alvi wrote:
>
> > Hello Folks,
> >
> > I am a newbie and was trying to run a workflow using Taverna 2.0 but
> > somehow it didn't work. That workflow runs conveniently with
> > Taverna1.7.1. Here is the output at the terminal.
> >
> > ---Upon opening the workflow:
> >
> > WARN 2009-06-02 02:00:21,831
> > (net.sf.taverna.t2.workbench.file.impl.FileManager
> > Impl:338) - Could not open from C:\Documents and Settings\Omer\My
> > Documents
> > \svnfiles\trunk\workflows\CFE_local.xml using
> > net.sf.taverna.t2.workbench.file.i
> > mpl.t2dataflowope...@dafa2c of type
> > net.sf.taverna.t2.workbench.file.impl.T2Flow
> > filet...@2c2d82b9
> >
> >
> >
> > -- Upon running :
> >
> >
> >
> >
> > Exception in thread "AWT-EventQueue-0" java.lang.ClassCastException:
> > net.sf.tave
> > rna.t2.workflowmodel.impl.DataflowOutputPortImpl$1 cannot be cast to
> > net.sf.tave
> > rna.t2.workflowmodel.ProcessorPort
> > at
> > net.sf.taverna.t2.workflowmodel.serialization.xml.DatalinksXMLSeriali
> > zer.datalinkToXML(DatalinksXMLSerializer.java:70)
> > at
> > net.sf.taverna.t2.workflowmodel.serialization.xml.DatalinksXMLSeriali
> > zer.datalinksToXML(DatalinksXMLSerializer.java:144)
> > at
> > net.sf.taverna.t2.workflowmodel.serialization.xml.DataflowXMLSerializ
> > er.serializeDataflow(DataflowXMLSerializer.java:70)
> > at
> > net.sf.taverna.t2.workflowmodel.serialization.xml.XMLSerializerImpl.s
> > erializeDataflow(XMLSerializerImpl.java:58)
> > at
> > net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction.actionPerfo
> > rmed(RunWorkflowAction.java:122)
> > at javax.swing.AbstractButton.fireActionPerformed(Unknown
> > Source)
> > at javax.swing.AbstractButton
> > $Handler.actionPerformed(Unknown Source)
> > at
> > javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
> > at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
> > at
> > javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Sour
> > ce)
> > at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
> > at java.awt.Component.processMouseEvent(Unknown Source)
> > at javax.swing.JComponent.processMouseEvent(Unknown Source)
> > at java.awt.Component.processEvent(Unknown Source)
> > at java.awt.Container.processEvent(Unknown Source)
> > at java.awt.Component.dispatchEventImpl(Unknown Source)
> > at java.awt.Container.dispatchEventImpl(Unknown Source)
> > at java.awt.Component.dispatchEvent(Unknown Source)
> > at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown
> > Source)
> > at java.awt.LightweightDispatcher.processMouseEvent(Unknown
> > Source)
> > at java.awt.LightweightDispatcher.dispatchEvent(Unknown
> > Source)
> > at java.awt.Container.dispatchEventImpl(Unknown Source)
> > at java.awt.Window.dispatchEventImpl(Unknown Source)
> > at java.awt.Component.dispatchEvent(Unknown Source)
> > at java.awt.EventQueue.dispatchEvent(Unknown Source)
> > at
> > java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
> > at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown
> > Source)
> > at
> > java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
> > at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> > at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> > at java.awt.EventDispatchThread.run(Unknown Source)
> >
> >
> > Your help is highly appreciated and I apologize in advance if this
> > is not the right place to ask this question.
> >
> > Cheers,
> >
> > Omer Alvi
>
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