Further to this, I think the biocatalogue people know about this and is due to be fixed in the future. An email to the general biocatalogue list might help to nudge this forward a bit, e.g. "Re: I'm a new user and can't use biocatalogue soaplab services"......... or something like that.
cheers, Paul. Alan Williams wrote: > halford e. (eh506) wrote: > > Hello, > > >> I am trying to use emboss services such as emma in taverna to make >> workflows. I am using the operation 'run'. Does this then need to be >> connected to another operation in order to get the multiple alignment >> results? The inputs required for many others seems to be 'jobID', but >> instead of this the output of run is 'runresponse'. >> >> Can anyone help me? >> > > emma is a soaplab service. Soaplab services (in Taverna) work by > calling a set of underlying WSDL operations. run is one of those > operations. > > Taverna, by default, will know about the emma service. It will be under > the "Soaplab @ http://www.ebi.ac.uk/soaplab/services"; branch of the > tree of services. You can add the service to the workflow from there > e.g. by r-clicking on it. > > It looks as if you told Taverna about the WSDL that describes the > operations underlying the Soaplab service e.g. by adding > http://www.ebi.ac.uk/soaplab/typed/services/alignment_multiple.emma?wsdl > as a new WSDL scavenger (in 1.7) or service provider (in 2.1). That is > almost never a good idea. > > I've been looking at the BioCatalogue page, and I think it needs to be > improved. For example, it should not tell you the WSDL location as that > is unlikely to be of use to anyone and is confusing to the general user. > > So, to summarize, you need to add emma as a Soaplab service, not as a > WSDL service, and your Taverna probably already knows about it. > > >> Thankyou >> >> Emily Halford >> > > Alan > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
