Hi Emma, Alan, Paul, Just to let you know, we are addressing this issue in the BioCatalogue and are working to provide better support for SOAPLAB services in the future.
Apologies for any inconveniences. Regards, Jits Paul Fisher wrote: > Further to this, I think the biocatalogue people know about this and is > due to be fixed in the future. > An email to the general biocatalogue list might help to nudge this > forward a bit, e.g. "Re: I'm a new user and can't use biocatalogue > soaplab services"......... or something like that. > > cheers, > Paul. > > > Alan Williams wrote: > >> halford e. (eh506) wrote: >> >> Hello, >> >> >> >>> I am trying to use emboss services such as emma in taverna to make >>> workflows. I am using the operation 'run'. Does this then need to be >>> connected to another operation in order to get the multiple alignment >>> results? The inputs required for many others seems to be 'jobID', but >>> instead of this the output of run is 'runresponse'. >>> >>> Can anyone help me? >>> >>> >> emma is a soaplab service. Soaplab services (in Taverna) work by >> calling a set of underlying WSDL operations. run is one of those >> operations. >> >> Taverna, by default, will know about the emma service. It will be under >> the "Soaplab @ http://www.ebi.ac.uk/soaplab/services"; branch of the >> tree of services. You can add the service to the workflow from there >> e.g. by r-clicking on it. >> >> It looks as if you told Taverna about the WSDL that describes the >> operations underlying the Soaplab service e.g. by adding >> http://www.ebi.ac.uk/soaplab/typed/services/alignment_multiple.emma?wsdl >> as a new WSDL scavenger (in 1.7) or service provider (in 2.1). That is >> almost never a good idea. >> >> I've been looking at the BioCatalogue page, and I think it needs to be >> improved. For example, it should not tell you the WSDL location as that >> is unlikely to be of use to anyone and is confusing to the general user. >> >> So, to summarize, you need to add emma as a Soaplab service, not as a >> WSDL service, and your Taverna probably already knows about it. >> >> >> >>> Thankyou >>> >>> Emily Halford >>> >>> >> Alan >> >> ------------------------------------------------------------------------------ >> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day >> trial. Simplify your report design, integration and deployment - and focus >> on >> what you do best, core application coding. Discover what's new with >> Crystal Reports now. http://p.sf.net/sfu/bobj-july >> _______________________________________________ >> taverna-users mailing list >> [email protected] >> [email protected] >> Web site: http://www.taverna.org.uk >> Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ >> >> > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
