this is the trace we saw the other day when Taverna could not load existing runs from the database. It seems this can kill loading of the user interface for showing results - not sure if it's in Jira, now we've got a nice error trace it should be easy to put in. :-)
Try deleting ~/.taverna-2.2.0 to start fresh. On Mon, Apr 18, 2011 at 17:11, Andrea Edwards <[email protected]> wrote: > Sorry, should have sent the error too > > Failed (INVOCATION) invoking > net.sf.taverna.t2.activities.beanshell.BeanshellActivity@1fb5dddf for job > DispatchJobEvent facade5:Workflow4:Beanshell[]: Uncaught exception while > invoking net.sf.taverna.t2.activities.beanshell.BeanshellActivity@1fb5dddf > java.lang.NoClassDefFoundError: Could not initialize class > net.sf.taverna.t2.workbench.views.results.processor.ProcessorResultsComponent > at > net.sf.taverna.t2.workbench.views.monitor.progressreport.WorkflowRunProgressTreeTableModel.setProcessorAverageInvocationTime(WorkflowRunProgressTreeTableModel.java:432) > at > net.sf.taverna.t2.workbench.views.monitor.progressreport.WorkflowRunProgressTreeTable.setProcessorAverageInvocationTime(WorkflowRunProgressTreeTable.java:115) > at > net.sf.taverna.t2.workbench.views.monitor.progressreport.WorkflowRunProgressMonitor.deregisterNode(WorkflowRunProgressMonitor.java:304) > at > net.sf.taverna.t2.workbench.views.monitor.progressreport.WorkflowRunProgressMonitor.notify(WorkflowRunProgressMonitor.java:125) > at > net.sf.taverna.t2.workbench.views.monitor.progressreport.WorkflowRunProgressMonitor.notify(WorkflowRunProgressMonitor.java:57) > at > net.sf.taverna.t2.lang.observer.MultiCaster.notify(MultiCaster.java:64) > at > net.sf.taverna.t2.monitor.MonitorManager.deregisterNode(MonitorManager.java:151) > at > net.sf.taverna.t2.monitor.MonitorManager.deregisterNode(MonitorManager.java:132) > at > net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke$InvokeCallBack.receiveResult(Invoke.java:299) > at > net.sf.taverna.t2.activities.beanshell.BeanshellActivity$1.run(BeanshellActivity.java:181) > at java.lang.Thread.run(Thread.java:636) > > > > On 18/04/11 17:04, Andrea Edwards wrote: > > HI > > Just tried the pathway workflow again and got same error > > However i tried another workflow which works from the command line but not > in taverna. This was just my test for the command line tool (it just > concatenates my forname and surname) > > andrea@oscar:~/taverna-2.2$ executeworkflow.sh getname.t2flow -inputvalue > forname andrea -inputvalue surname edwards > Outputs will be saved to the directory: > /home/andrea/taverna-2.2/Workflow4_output_1 > andrea@oscar:~/taverna-2.2$ cd Workflow4_output > andrea@oscar:~/taverna-2.2/Workflow4_output$ ls > out > andrea@oscar:~/taverna-2.2/Workflow4_output$ head out > andrea edwards > andrea@oscar:~/taverna-2.2/Workflow4_output$ > > > However it does not work inside taverna. I have attached the workflow > > cheers > > > > > On 18/04/11 16:41, Alan R Williams wrote: > > On 18/04/2011 16:26, Andrea Edwards wrote: > > HI > > Hello > > I can run other workflows > What database are you referring to? > > Two other users reported a similar problem. It could be solved by > removing the database in which Taverna stores provenance information > (and perhaps data). > > However, I would have expected a corrupt database to prevent you running > any workflows. If you send me the input values, I can try to replicate > your problem. > > thanks > > Alan > > ------------------------------------------------------------------------------ > Benefiting from Server Virtualization: Beyond Initial Workload > Consolidation -- Increasing the use of server virtualization is a top > priority.Virtualization can reduce costs, simplify management, and improve > application availability and disaster protection. Learn more about boosting > the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/about/contact-us/ > > > ------------------------------------------------------------------------------ > Benefiting from Server Virtualization: Beyond Initial Workload > Consolidation -- Increasing the use of server virtualization is a top > priority.Virtualization can reduce costs, simplify management, and improve > application availability and disaster protection. Learn more about boosting > the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev > > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/about/contact-us/ > > > ------------------------------------------------------------------------------ > Benefiting from Server Virtualization: Beyond Initial Workload > Consolidation -- Increasing the use of server virtualization is a top > priority.Virtualization can reduce costs, simplify management, and improve > application availability and disaster protection. Learn more about boosting > the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/about/contact-us/ > > -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester ------------------------------------------------------------------------------ Benefiting from Server Virtualization: Beyond Initial Workload Consolidation -- Increasing the use of server virtualization is a top priority.Virtualization can reduce costs, simplify management, and improve application availability and disaster protection. Learn more about boosting the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
