2011/5/24 Mikołaj Rybiński <[email protected]>:
> Hi,
>
> I run into problems with StAX when using JSBML (0.8-b2 with
> dependencies bundled:
> http://sourceforge.net/projects/jsbml/files/jsbml/0.8-b2/jsbml-0.8-b2-with-dependencies.jar/download
> ); specifically, SBMLWriter.write method. JSBML depends, among others,
> on Woodstox StAX implementation (woodstox-core-lgpl-4.0.9.jar).
Re-edit (typo):
After pruning the problem (see attached workflow) I've reached a point
where it turned out that from beanshell in Taverna a
"com.sun.xml.internal.stream.XMLOutputFactoryImpl" implementation of
the "javax.xml.stream.XMLOutputFactory" interface is used, instead of
"com.ctc.wstx.stax.WstxOutputFactory".
> The latter is
> required as the JSBML code tries to set Woodstox-specific property.
> I've looked for a way to tell from the running code to use desired
> implementation. I've only found the following method:
>
> System.setProperty("javax.xml.stream.XMLOutputFactory",
> "com.ctc.wstx.stax.WstxOutputFactory");
>
> but this results in
>
> javax.xml.stream.FactoryFinder$ConfigurationError: Provider
> com.ctc.wstx.stax.WstxOutputFactory not found
>
> although the class is provided with installed, additional JSBML lib.
>
> Can I force Taverna (Beanshell interpreter?) to use the StAX
> implementation provided with Beanshell's JAR dependency? How?
>
Best regards,
Mikołaj
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