Hello again,
i have succesfuly used taverna+Velvet but there is another problem that i
face right now.
When velvet executes it creates a FastA file called contigs.fa in a
specified place in my Biolinux file-system.
Now right-click on the service tool-->file outputs
Taverna port name: out1
from file: /home/blahblah/contigs.fa
file type: text
i connect this with an output port (which sholld hold the FastaA txt file
from the system right ?)
i run my workflow
and i get :
Error trace
Processor 'Tool - Port 'out1'
No result for out1
I have tried so many things but nothing worked, any suggestions/solutions ?
thx
Chris
On Mon, Apr 23, 2012 at 7:53 PM, Yannis <[email protected]> wrote:
> Hello,
>
> thanks Alan , looks interesting !
>
> yannis.
>
>
> On Mon, Apr 23, 2012 at 6:24 PM, Alan R Williams <[email protected]>wrote:
>
>> On 23/04/2012 18:09, Yannis wrote:
>> > Hello,
>>
>> Hello
>>
>> > i was wondering if there is a way to import Velvet's functionality (
>> > http://www.ebi.ac.uk/~zerbino/velvet/) into a Taverna workflow.
>> >
>> > By doing that I will be able to automate the procedure instead of
>> getting
>> > the results from Velvet manually and then feeding them to my workflow.
>> >
>> > Is there a way to do so and if there isn't one could you propose
>> > alternatives to Velvet that can be used with Taverna (either web
>> services
>> > or shim) ?
>>
>> A quick look at the manual suggests it could be called from a tool
>> service. Have you looked at that possibility?
>>
>> > Thanks in advance for your response,
>> >
>> > Chris.
>>
>> Alan
>>
>>
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