On 24/04/2012 17:01, Yannis wrote: > Hello again, Hello
> i have succesfuly used taverna+Velvet but there is another problem that i > face right now. > When velvet executes it creates a FastA file called contigs.fa in a > specified place in my Biolinux file-system. > Now right-click on the service tool-->file outputs > > Taverna port name: out1 > from file: /home/blahblah/contigs.fa > file type: text [snip] > I have tried so many things but nothing worked, any suggestions/solutions ? I think the tool service is limited to reading files that are in the directory where the tool ran. You can "cheat" by adding something like ln -s fred /home/blahblah/contigs.fa to the tool services's script and then reading from fred. > thx > > Chris Alan ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
