Oh man, so glad I randomly clicked on your your message! I just wrote a 
post about the same problem, except I was getting the segmentation fault 
while simply trying to run some old code on the GPU with the new GPU 
backend.  I also use anaconda and using the init_gpu_device flag instead of 
the ordinary device flag as well as downgrading pygpu and libgpuarray also 
solved my problem. Not sure if the problem lies with Theano, but seems like 
this could affect a fair number of people.


On Sunday, July 16, 2017 at 4:15:51 AM UTC-7, Christopher Bourez wrote:
>
> Moreover if you install Theano from scratch :
>
> conda install theano pygpu
>
> Fetching package metadata .........
> Solving package specifications: .
>
> Package plan for installation in environment /root/miniconda2:
>
> The following NEW packages will be INSTALLED:
>
>     libgpuarray: 0.6.8-0     
>     pygpu:       0.6.8-py27_0
>     theano:      0.9.0-py27_0
>
>
> you need to run the following correction after :
>
> conda install libgpuarray=0.6.4-0 pygpu=0.6.4
>
>
> And now that works on the server I was initially working on. 
>
>

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