Well, I may not be a true tw5 wiz, I am the main dev on Bob. Bob creates 
wikis in a consistent place because it makes probability easier and I 
haven't come up with a simple UI for changing the location that didn't 
confuse people. But you can put the wikis wherever you want them to be.

You set the locations of existing wiki folders in the manual settings tab 
or by editing the settings.json file in the settings sub-folder of the root 
wiki. So far I haven't run into a time when there has been a problem having 
a defined folder structure for wikis.

The folder struture Bob uses is like this:

Main Folder
  tiddlers folder
  settings folder
  tiddlywiki.info

so the settings and tiddlywiki.info file have to be somewhere, and like I 
said the file system monitor (the part that makes changes that happen on 
the file system get pushed to the browser) interacts with every file is the 
folder and could cause undesired behaviour.

If you just want wikis in different places that Bob supports that out of 
the box, just manually set the locations of existing wiki folders. If you 
want something else than we can add it to the list.

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