Agreed with Magnus that there are a lot of possible variables in your setup 
that need to be ruled out.  

Are you using the SR620 driver in TimeLab, or did you find a way to get it to 
emit data continuously via the RS232 port for use with the talk-only driver?  
I've seen occasional instances where a counter has ignored every other trigger 
when used in addressable mode by TimeLab.  It's not always readily 
reproducible, but the counter drivers in the current beta at 
http://www.miles.io/timelab/beta.htm seem to be a bit less prone to that 
behavior.  If you aren't already using the beta, try that.

It's always safest to use counters in talk-only mode when possible, since that 
rules out any timing problems that might arise in a two-way GPIB or serial 
conversation where each individual reading is requested by the software as done 
by the 5313xA, Philips, DTS2070-series, and SR620 drivers.  Some of those 
counters can be used in both talk-only and addressable modes, but I don't 
believe that's true of the SR620, unfortunately.  All of the programming 
examples in the SR620 manual work by requesting each reading individually. 

-- john, KE5FX
Miles Design LLC

> > I have here a setup with four (FPGA) nodes that produce synchronized pulses
> > with a 20kHz rate. I have two SR620s two measure those pulses.
> >

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