In what I've read people use Apache+Tomcat because better performance in apache serving static content, and the potential to use PHP served by apache for example. In the case that you only use dinamic java code, it's better because it's easier to mantain one service that two!!! But I'ver read too that performance for SSL is far better in apache so people make the ssl in apache and serve dinamic content with tomcat, but I've no experience (until now) so I'm talking only what I've read...
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