Your feedback and answers are so on point it's almost scary :) Was indeed a type and all TopBraid services seem to work fine now indeed!
Have a nice day, Stefan Op donderdag 11 juni 2020 14:59:39 UTC+2 schreef Richard Cyganiak: > > Stefan, please double-check both values for the -Xmx setting. This error > can occur when accidentally setting something like -Xmx4 instead of -Xmx4g. > > Richard > > > On 11 Jun 2020, at 13:34, Stefan Verweij <stefan...@dupont.com > <javascript:>> wrote: > > Thanks Richard, this seems to work as well. > > I have a new question, partially related to this question. I am running > two docker services, one with a TopBraid instance with the dev license and > the other with the production license. Each service listens to its unique > port on the same host. One of the services runs without problems, the other > exits with error code one stating > Error occurred during initialization of VM > Too Small initial heap > > I guess this has something to do with the JAVA_OPTS env variable ( > https://www.topquadrant.com/docs/tbl/TBLInstallGuide/index.html), which I > declare once in each Docker service as follows: > > environment: > - JAVA_OPTS=-Xmx4g > > > ShouldI take another value for the JAVA_OPTS? Or how can I solve this > error message otherwise? > > Op vrijdag 5 juni 2020 16:02:17 UTC+2 schreef Richard Cyganiak: >> >> Hi Stefan, >> >> On 3 Jun 2020, at 09:02, Stefan Verweij <stefan...@dupont.com> wrote: >> >> Richard, everything seems to work like you mentioned. Thanks for your >> help!! >> >> Just FYI about the structure of the Docker image: I currently copy the >> server.xml and the edg.war to their locations in the TopBraid installation >> path, I also copy the web.xml to the image (but not yet it's right >> location). For this, I use a wrapper script which first starts the Tomcat >> service in the background using catalina.sh start. Copies the web.xml to >> its right location (though I am not sure if this is >> /usr/local/tomcat/conf/web.xml or >> /usr/local/tomcat/webapps/edg/WEB-INF/web.xml). Anyway, then I restart the >> Tomcat service in the foreground using shutdown.sh and catalina.sh run. >> >> >> The web.xml should go into webapps/edg/WEB-INF/web.xml within the Tomcat >> directory. >> >> One thing you also could try: edg.war is really just a zip file, and if >> you put web.xml into the zip file at WEB-INF/web.xml, then it will end up >> in the right place after edg.war is deployed, and this may work without a >> Tomcat restart. >> >> Richard >> >> >> >> >> Have a lovely day, >> Stefan >> >> Op dinsdag 2 juni 2020 17:11:33 UTC+2 schreef Richard Cyganiak: >>> >>> Stefan, >>> >>> On 2 Jun 2020, at 15:45, Stefan Verweij <stefan...@dupont.com> wrote: >>> >>> Thanks Richard, this has been very helpful! Found the path indeed now. >>> It indeed seems logical to just bind to the root of this workspace indeed >>> instead of creating a volume for every subdir. >>> >>> Though I still need a volume to the installation directory for the >>> server.xml and the web.xml right? >>> >>> >>> That depends on how the Docker image is built. It might be possible to >>> put these files into the image as they don't change after installation. >>> >>> Richard >>> >>> >>> >>> >>> Stefan >>> >>> Op dinsdag 2 juni 2020 16:12:58 UTC+2 schreef Richard Cyganiak: >>>> >>>> Stefan, >>>> >>>> When I say “workspace” I mean the EDG workspace, which is a directory >>>> you configure during installation and it gets stored in the web.xml file. >>>> This is usually a directory created for EDG. Our docs say: “Example >>>> locations include /var/lib/topbraid/ontologies for Linux and >>>> C:/Users/TQ/Workspace for Windows.” >>>> >>>> /usr/local/tomcat is the Tomcat installation directory and is something >>>> different. >>>> >>>> Richard >>>> >>>> >>>> >>>> On 2 Jun 2020, at 14:58, Stefan Verweij <stefan...@dupont.com> wrote: >>>> >>>> Thanks for your fast reply Richard, it is much appreciated. >>>> >>>> I cannot find any other `_DATA` or `_data` or `_Data` in my container >>>> besides the one at the root level `/`. Also I can only find the logs of >>>> the >>>> paths you described in the workspace (which is `/usr/local/tomcat/` if I >>>> am >>>> not mistaken?) >>>> Would love to bind the root of the workspace, but Docker does not allow >>>> this - or at least I have not found a way yet to bind `/`. >>>> >>>> >>>> Looking forward to your reply. >>>> >>>> Regards, >>>> Stefan >>>> >>>> >>>> >>>> Op dinsdag 2 juni 2020 14:51:05 UTC+2 schreef Richard Cyganiak: >>>>> >>>>> Try /_Data under the workspace. Capitalization matters on most >>>>> operating systems and the documentation has it wrong. We'll fix it. >>>>> >>>>> You might want to consider binding the root of the workspace to a host >>>>> directory instead, because data ends up in a number of workspace >>>>> locations: >>>>> >>>>> - /Repositories/, where the system creates connector files for all >>>>> graphs >>>>> - /server.topbraidlive.org/dynamic/, where configuration files and >>>>> the license file are stored (and sometimes temp files) >>>>> - /Corpora/, if you use the Corpus asset collection type with file >>>>> upload >>>>> - /logs/, where the TB log is stored >>>>> - Uploaded projects >>>>> >>>>> The rest of the workspace is static files that are not modified after >>>>> initial installation (unless I'm forgetting something). >>>>> >>>>> Hope that helps, >>>>> >>>>> Richard >>>>> >>>>> >>>>> >>>>> >>>>> On 2 Jun 2020, at 13:34, Stefan Verweij <stefan...@dupont.com> wrote: >>>>> >>>>> Hi, >>>>> >>>>> I've deployed a docker service with TopBraid EDG 6.3 as a running >>>>> instance. Deployment works as it should be and after license registration >>>>> and setting the configuration parameters (choosing TDB: Store graphs >>>>> in the general shared database) my TopBraid instance is up and running. I >>>>> chose to work with the "TBD general shared database", since all graphs >>>>> will >>>>> be stored at the root of the workspace in the /_DATA directory (according >>>>> to https://doc.topquadrant.com/6.3/server-administration/ - EDG >>>>> Configuration Parameters part). This way I can create a bind volume to >>>>> /_DATA so all the graphs are stored at my host as well (in case the >>>>> container fails and all my graphs are lost). >>>>> >>>>> However, when I shell into my container using >>>>> docker exec -it [container_id] /bin/bash >>>>> to look if my newly added graphs (such as an ontology) are indeed >>>>> stored in the /_DATA directory, the directory is empty. >>>>> >>>>> *Now my question is where does TopBraid store the graphs? *I've added >>>>> an ontology so it must be located somewhere right? >>>>> >>>>> >>>>> (This question also applies to license storage and configuration >>>>> storage, so I don't have to manually register the license and change the >>>>> EDG configuration parameters every time I start the Docker instance). >>>>> >>>>> >>>>> Kind regards, >>>>> Stefan >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "TopBraid Suite Users" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to topbrai...@googlegroups.com. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/topbraid-users/dab1c5ed-c91e-4d8a-baf7-f65c57ff9c48%40googlegroups.com >>>>> >>>>> <https://groups.google.com/d/msgid/topbraid-users/dab1c5ed-c91e-4d8a-baf7-f65c57ff9c48%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>>> >>>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "TopBraid Suite Users" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to topbrai...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/topbraid-users/cd16445d-9785-42df-bfbf-262a20029939%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/topbraid-users/cd16445d-9785-42df-bfbf-262a20029939%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>>> >>>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "TopBraid Suite Users" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to topbrai...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/topbraid-users/fb6d3add-dad7-488f-96ee-c83c98ae3e63%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/topbraid-users/fb6d3add-dad7-488f-96ee-c83c98ae3e63%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >>> >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "TopBraid Suite Users" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to topbrai...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/topbraid-users/01dfb927-7337-4cd5-b339-76baa133f262%40googlegroups.com >> >> <https://groups.google.com/d/msgid/topbraid-users/01dfb927-7337-4cd5-b339-76baa133f262%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> >> >> > -- > You received this message because you are subscribed to the Google Groups > "TopBraid Suite Users" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to topbrai...@googlegroups.com <javascript:>. > To view this discussion on the web visit > https://groups.google.com/d/msgid/topbraid-users/06fd3b1f-2bad-4d79-9731-ca28596eea8fo%40googlegroups.com > > <https://groups.google.com/d/msgid/topbraid-users/06fd3b1f-2bad-4d79-9731-ca28596eea8fo%40googlegroups.com?utm_medium=email&utm_source=footer> > . > > > -- You received this message because you are subscribed to the Google Groups "TopBraid Suite Users" group. 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