Your panel issue can probably be solved by some Windows+Alt+Right clicking on the launcher icons to move them to the left-hand side.

Have you removed the packages you grabbed from Debian (and install again Trisquel's equivalents if needed, i.e., if applications depend on it)? You can use the Synaptic package manager to do so. If you do not remember what you installed, you can read /var/log/apt/history.log

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