<snip> My mistakes, the first generated-data has some problems: the newly uploaded
tar.gz one is: https://docs.google.com/open?id=0B93SVRfpVVg3Mjk0YjYzYTMtNzgzZS00NDk4LWI1M2QtNGE5OGZlMjYyNmM5 zip one is https://docs.google.com/open?id=0B93SVRfpVVg3MDYwZWMzYzItYmI4ZC00MmIxLTg0NmMtMzM5MzZkZTAxZjJl The below code generated those data has problems in appending parts (reading mulitiple files), I don't know which parts was wrong: #!/usr/bin/python3 import os.path from itertools import groupby DICTIONARYFILE="dictionary.pdb" INFILEEXT=".out" OUTFILEEXT=".txt" mapping={} def generate_dict(dictionarysourcefile): for line in open(dictionarysourcefile,"r"): parts=line.strip().split() mapping[parts[2]]=parts[0] def fetchonefiledata(dictionary,infilename): with open(infilename,"r") as f: residues=[] residueID=[] residues=[dictionary[line.split()[2]] for line in f] print(residues) for i in range(len(residues)): residueID.append(residues[i][:-3]) remove_coming_dup(residueID) def remove_coming_dup(a_list): b_list=a_list[0:1] for x in a_list[1:]: if x != b_list[-1]: b_list.append(x) with open(base+OUTFILEEXT,"w") as f: for index, b in enumerate([b_list]): print(b,file=f) if __name__=="__main__": generate_dict(DICTIONARYFILE) for filename in os.listdir("."): base, ext = os.path.splitext(filename) if ext == INFILEEXT: fetchonefiledata(mapping,filename) _______________________________________________ Tutor maillist - Tutor@python.org To unsubscribe or change subscription options: http://mail.python.org/mailman/listinfo/tutor
