Throwing my hat into the ring.  I just installed eclipse via synaptic
(version 3.5.1+repack~1-0ubuntu3), and the Update Site list was empty
for me as well.  I don't think it was a GTK painting bug, since I
couldn't find "Eclipse XML Editors and Tools ".  I had to export the
list from the Eclipse on my Windows partition, and then import it into
the one in my Ubuntu partition.

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Update Site list is empty in "Install New Software"
https://bugs.launchpad.net/bugs/460944
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