I've been having this problem for months...MONTHS!! I either install the
update (2.6.31-16), reboot and get the kernel panic issue or actually
use the (2.6.31-16) update, install and configure my applications, get
in a few reboots that actually took me back to my desktop until that
unlucky time it doesn't work. I thought it was the .iso or the dvd I
used (even though when I checked cd for defects it passed and for the
.iso, I downloaded it with a usb creating tool like LinuxLive USB
Creator, which verifies the .iso file. I also thought it had something
to do with the hdd order because the main hdd wasn't on sata 0 but on
sata 1. So before the 3rd or 4th installation of Ubuntu 9.10, I swapped
the hdds to the correct order...still had the issue.

What I've done to make this stable (for the moment) is to load 14 (which
ALWAYS works) using the steps mentioned in the beginning of this forum,
completely remove all the kernels (2.6.31-15/16-generic), update the
system (which doesn't even include the uninstalled kernels), reboot,
installed from scratch the 2.6.31-16 headers, headers-generic and the
linux-image for that kernel, did not hit restart now and did it using
the menu and here I am now, no grub2 command line, no kernel panic,
smooth sailing...

-- 
After 9.10 grub update can not boot into Wubi install
https://bugs.launchpad.net/bugs/477104
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