I have noticed this also, on numerous occasions. However, without the
dropping of packages (which is actually a bit more annoying)

Since I'm using a very unstable connection (and have set up Apt-proxy on
many unstable connections) I've noticed that quite often the download
times-out.

Then aptitude (or apt-get) will wisely attempt to restart the connection
and download the package again.

Apt-cacher is apparently (still?) unable to deal with this new download however:
Wed Apr 14 12:35:10 2010|info [18637]: return_file 
/var/cache/apt-cacher/packages/libsvn1_1.5.4dfsg1-1ubuntu2.1_i386.deb aborted 
by timeout at 274049 of 734110 bytes
Wed Apr 14 12:37:15 2010|info [18642]: return_file 
/var/cache/apt-cacher/packages/libsvn1_1.5.4dfsg1-1ubuntu2.1_i386.deb aborted 
by timeout at 274049 of 734110 bytes

It passes the partial download, and then is incapable of downloading the
rest of the file.

What I have to do is go and download the files myself, and re-download hoping 
that the download does not time out again:
rm /var/cache/apt-cacher/packages/libsvn1_1.5.4dfsg1-1ubuntu2.1_i386.deb
rm /var/cache/apt/archives/partial/libsvn1_1.5.4dfsg1-1ubuntu2.1_i386.deb

Package: apt-cacher
Version: 1.6.11
Ubuntu Release: 9.04 (Jaunty)

-- 
apt-cacher should resume unfinished downloads
https://bugs.launchpad.net/bugs/241350
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