I have the same problem with a Radeon X1300 card and it can be fixed using the 
'radeon.modeset=0' kernel option, so I guess it is related to KMS.
The problem was not present in ubuntu 10.04 and started to show in 10.10. It is 
still present in 11.04 alpha 3.

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https://bugs.launchpad.net/bugs/727979

Title:
  Screen flicker approx. every 30 seconds

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