It seems that there is a communication problem.

Open a terminal and activate debug messages: 'export SANE_DEBUG_PIXMA=11' and 
'export SANE_DEBUG_SANEI_USB=255'. 
(1) check the usb devices: 'lsusb -v &>usb.log'
(2) start scanimage searching your scanner: 'scanimage -L 2>pixma.log'.
(3) try a scan: 'export SANE_DEBUG_PIXMA=4' and 'scanimage 2>scan.log >scan.pnm'

Please provide the logfiles here or in the Sane-devel mailing list:
sane-de...@lists.alioth.debian.org.

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https://bugs.launchpad.net/bugs/601652

Title:
  Cannon CanoScan 9000F not supported in Ubuntu xsane

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