I have just encountered this issue on an Ubuntu 14.04 LTS instance. It
was setup in early 2014, and has had only a light workload serving an
API backend for a medical education system in use by many doctors.

Ironically, it seems to be _because_ I enabled unattended-upgrades that
the system now cannot update itself.

And I not sure how to repair this situation without interrupting
service, since many package management commands depend on first doing
apt-get update, which is what I cannot do. And I don't think I
understand the system well enough to be sure that if I erase something
manually it is not critical.

If anyone has advice on this, I'd appreciate, even if only pointers to
books on more esoteric aspects of Ubuntu package management.

$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 12.04.4 LTS
Release:        12.04
Codename:       precise

$ df -h
Filesystem      Size  Used Avail Use% Mounted on
/dev/xvda1      7.9G  5.9G  1.7G  78% /
udev            288M   12K  287M   1% /dev
tmpfs            60M  196K   59M   1% /run
none            5.0M     0  5.0M   0% /run/lock
none            296M     0  296M   0% /run/shm

$ df -i
Filesystem     Inodes  IUsed IFree IUse% Mounted on
/dev/xvda1     524288 518210  6078   99% /
udev            73475    379 73096    1% /dev
tmpfs           75541    266 75275    1% /run
none            75541      3 75538    1% /run/lock
none            75541      1 75540    1% /run/shm

$ find /usr/src/ -type f | wc -l
345657

$ uptime
 06:18:41 up 664 days, 11:16,  2 users,  load average: 0.21, 0.20, 0.13

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https://bugs.launchpad.net/bugs/1089195

Title:
  linux-headers will eat your inodes on LTS.

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