Thanks Dmitry for spending so much time on this.

I had been meaning to create a separate bug for the freezing behaviour,
and to try and get some debug output from X to send upstream to
Qjackctl. But I had been busy, and it looks like you have found the
issue anyway.

Not knowing the X11 API nor QT myself, do you think it would be easy to
patch Qjackctl to use the QT5 functions instead (at least in this one
place)?

I can forward your analysis upstream on a new bug, but we only have a
few weeks and they may not respond quickly enough.

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https://bugs.launchpad.net/bugs/1546328

Title:
  Systray option does not work.

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