Public bug reported:

Hello, a recent apt update appears to have broken apt entirely.

A coworker reported seeing troubles: http://paste.ubuntu.com/23487135/

To test, I upgraded my laptop then immediately re-ran apt-get update &&
apt-get -u dist-upgrade:

sarnold@hunt:~/Downloads$ sudo apt-get update && sudo apt-get -u dist-upgrade
Hit:1 http://mirrors.kernel.org/ubuntu xenial InRelease
Hit:2 http://mirrors.kernel.org/ubuntu xenial-updates InRelease                 
                                  
Hit:3 http://mirrors.kernel.org/ubuntu xenial-security InRelease                
                                  
Ign:4 http://mirrors.kernel.org/ubuntu precise InRelease                        
                                  
Get:5 http://mirrors.kernel.org/ubuntu precise-updates InRelease [55.7 kB]      
                                  
Get:6 http://mirrors.kernel.org/ubuntu precise-security InRelease [55.7 kB]     
                                  
Get:7 http://mirrors.kernel.org/ubuntu precise-proposed InRelease [55.7 kB]     
                                  
Ign:8 http://mirrors.kernel.org/ubuntu trusty InRelease                         
                                  
Get:9 http://mirrors.kernel.org/ubuntu trusty-updates InRelease [65.9 kB]       
                                  
Hit:10 http://mirrors.kernel.org/ubuntu trusty-security InRelease               
                                  
Get:11 http://mirrors.kernel.org/ubuntu trusty-proposed InRelease [65.9 kB]     
                                  
Get:12 http://mirrors.kernel.org/ubuntu xenial-proposed InRelease [247 kB]      
                                  
Err:1 http://mirrors.kernel.org/ubuntu xenial InRelease                         
                                  
  At least one invalid signature was encountered.
Hit:13 http://security.debian.org jessie/updates InRelease                      
                                  
Err:2 http://mirrors.kernel.org/ubuntu xenial-updates InRelease                 
                                  
  At least one invalid signature was encountered.
Get:14 http://mirrors.kernel.org/ubuntu yakkety InRelease [247 kB]              
                                  
Err:3 http://mirrors.kernel.org/ubuntu xenial-security InRelease                
                                  
  At least one invalid signature was encountered.
Hit:15 http://mirrors.kernel.org/ubuntu yakkety-updates InRelease               
                                  
Get:16 http://mirrors.kernel.org/ubuntu yakkety-security InRelease [93.3 kB]    
                                  
Hit:17 http://security.debian.org wheezy/updates InRelease                      
                                  
Get:18 http://mirrors.kernel.org/ubuntu yakkety-proposed InRelease [95.7 kB]    
                                  
Hit:19 http://mirrors.kernel.org/ubuntu zesty InRelease                         
                                  
Hit:20 http://mirrors.kernel.org/ubuntu zesty-updates InRelease                 
                                  
Hit:21 http://mirrors.kernel.org/ubuntu zesty-security InRelease                
                                  
Err:5 http://mirrors.kernel.org/ubuntu precise-updates InRelease                
                                  
  At least one invalid signature was encountered.
Hit:22 http://mirrors.kernel.org/ubuntu zesty-proposed InRelease                
                                  
Hit:23 http://mirrors.kernel.org/ubuntu precise Release                         
                                  
Hit:24 http://mirrors.kernel.org/ubuntu trusty Release                          
                                  
Ign:25 http://archive.canonical.com/ubuntu precise InRelease                    
                                  
Hit:26 http://security.ubuntu.com/ubuntu xenial-security InRelease              
                                  
Hit:27 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu vivid 
InRelease
Hit:28 http://ftp.debian.org/debian unstable InRelease                          
               
Err:6 http://mirrors.kernel.org/ubuntu precise-security InRelease        
  At least one invalid signature was encountered.
Err:7 http://mirrors.kernel.org/ubuntu precise-proposed InRelease               
               
  At least one invalid signature was encountered.
Err:9 http://mirrors.kernel.org/ubuntu trusty-updates InRelease                 
               
  At least one invalid signature was encountered.
Ign:29 http://archive.canonical.com/ubuntu trusty InRelease                     
                
Hit:30 http://ppa.launchpad.net/snappy-dev/image/ubuntu vivid InRelease         
                
Hit:31 http://ftp.debian.org/debian testing InRelease                     
Err:10 http://mirrors.kernel.org/ubuntu trusty-security InRelease         
  At least one invalid signature was encountered.
Err:11 http://mirrors.kernel.org/ubuntu trusty-proposed InRelease               
                
  At least one invalid signature was encountered.
Err:13 http://security.debian.org jessie/updates InRelease                      
                
  At least one invalid signature was encountered.
Hit:32 http://archive.canonical.com/ubuntu xenial InRelease                     
                
Hit:33 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu 
xenial InRelease
Ign:34 http://ftp.debian.org/debian jessie InRelease                     
Err:12 http://mirrors.kernel.org/ubuntu xenial-proposed InRelease        
  At least one invalid signature was encountered.
Err:14 http://mirrors.kernel.org/ubuntu yakkety InRelease                
  At least one invalid signature was encountered.
Hit:35 http://archive.canonical.com/ubuntu yakkety InRelease              
Err:15 http://mirrors.kernel.org/ubuntu yakkety-updates InRelease         
  At least one invalid signature was encountered.
Hit:36 http://ftp.debian.org/debian jessie-updates InRelease              
Err:16 http://mirrors.kernel.org/ubuntu yakkety-security InRelease        
  At least one invalid signature was encountered.
Err:17 http://security.debian.org wheezy/updates InRelease                
  At least one invalid signature was encountered.
Hit:37 http://archive.canonical.com/ubuntu zesty InRelease                
Err:18 http://mirrors.kernel.org/ubuntu yakkety-proposed InRelease        
  At least one invalid signature was encountered.
Ign:38 http://ftp.debian.org/debian wheezy InRelease                     
Err:19 http://mirrors.kernel.org/ubuntu zesty InRelease                  
  At least one invalid signature was encountered.
Err:20 http://mirrors.kernel.org/ubuntu zesty-updates InRelease           
  At least one invalid signature was encountered.
Hit:39 http://archive.canonical.com/ubuntu precise Release                
Err:21 http://mirrors.kernel.org/ubuntu zesty-security InRelease          
  At least one invalid signature was encountered.
Hit:40 http://ftp.debian.org/debian wheezy-updates InRelease              
Err:22 http://mirrors.kernel.org/ubuntu zesty-proposed InRelease          
  At least one invalid signature was encountered.
Err:41 http://mirrors.kernel.org/ubuntu precise Release.gpg               
  At least one invalid signature was encountered.
Hit:42 http://archive.canonical.com/ubuntu trusty Release                
Err:43 http://mirrors.kernel.org/ubuntu trusty Release.gpg               
  At least one invalid signature was encountered.
Hit:44 http://ftp.debian.org/debian jessie Release  
Err:26 http://security.ubuntu.com/ubuntu xenial-security InRelease
  At least one invalid signature was encountered.
Err:27 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu vivid 
InRelease
  At least one invalid signature was encountered.
Err:28 http://ftp.debian.org/debian unstable InRelease
  At least one invalid signature was encountered.
Hit:45 http://ftp.debian.org/debian wheezy Release  
Err:30 http://ppa.launchpad.net/snappy-dev/image/ubuntu vivid InRelease
  At least one invalid signature was encountered.
Err:31 http://ftp.debian.org/debian testing InRelease
  At least one invalid signature was encountered.
Err:32 http://archive.canonical.com/ubuntu xenial InRelease
  At least one invalid signature was encountered.
Err:33 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu 
xenial InRelease
  At least one invalid signature was encountered.
Err:35 http://archive.canonical.com/ubuntu yakkety InRelease
  At least one invalid signature was encountered.
Err:36 http://ftp.debian.org/debian jessie-updates InRelease
  At least one invalid signature was encountered.
Err:37 http://archive.canonical.com/ubuntu zesty InRelease
  At least one invalid signature was encountered.
Err:46 http://archive.canonical.com/ubuntu precise Release.gpg
  At least one invalid signature was encountered.
Err:40 http://ftp.debian.org/debian wheezy-updates InRelease
  At least one invalid signature was encountered.
Err:47 http://archive.canonical.com/ubuntu trusty Release.gpg
  At least one invalid signature was encountered.
Err:48 http://ftp.debian.org/debian jessie Release.gpg
  At least one invalid signature was encountered.
Err:49 http://ftp.debian.org/debian wheezy Release.gpg
  At least one invalid signature was encountered.
Fetched 981 kB in 1s (496 kB/s)
Reading package lists... Done
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu xenial InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu xenial-updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu xenial-security InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu precise-updates InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu precise-security InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu precise-proposed InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu trusty-updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu trusty-security InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu trusty-proposed InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://security.debian.org jessie/updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu xenial-proposed InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu yakkety InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu yakkety-updates InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu yakkety-security InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://security.debian.org wheezy/updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu yakkety-proposed InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu zesty InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu zesty-updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu zesty-security InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu zesty-proposed InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu precise Release: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://mirrors.kernel.org/ubuntu trusty Release: At least one invalid signature 
was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://security.ubuntu.com/ubuntu xenial-security InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu vivid 
InRelease: At least one invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian unstable InRelease: At least one invalid signature 
was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ppa.launchpad.net/snappy-dev/image/ubuntu vivid InRelease: At least one 
invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian testing InRelease: At least one invalid signature 
was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://archive.canonical.com/ubuntu xenial InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu 
xenial InRelease: At least one invalid signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://archive.canonical.com/ubuntu yakkety InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian jessie-updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://archive.canonical.com/ubuntu zesty InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://archive.canonical.com/ubuntu precise Release: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian wheezy-updates InRelease: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://archive.canonical.com/ubuntu trusty Release: At least one invalid 
signature was encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian jessie Release: At least one invalid signature was 
encountered.
W: An error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://ftp.debian.org/debian wheezy Release: At least one invalid signature was 
encountered.
W: Failed to fetch http://mirrors.kernel.org/ubuntu/dists/xenial/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/xenial-updates/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/xenial-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://security.ubuntu.com/ubuntu/dists/xenial-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu/dists/vivid/InRelease
  At least one invalid signature was encountered.
W: Failed to fetch 
http://ppa.launchpad.net/snappy-dev/image/ubuntu/dists/vivid/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch 
http://ppa.launchpad.net/ci-train-ppa-service/stable-phone-overlay/ubuntu/dists/xenial/InRelease
  At least one invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/precise-updates/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/precise-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/precise-proposed/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/trusty-updates/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/trusty-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/trusty-proposed/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/xenial-proposed/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch http://archive.canonical.com/ubuntu/dists/xenial/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://mirrors.kernel.org/ubuntu/dists/yakkety/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/yakkety-updates/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/yakkety-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/yakkety-proposed/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch http://archive.canonical.com/ubuntu/dists/yakkety/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://mirrors.kernel.org/ubuntu/dists/zesty/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/zesty-updates/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/zesty-security/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch 
http://mirrors.kernel.org/ubuntu/dists/zesty-proposed/InRelease  At least one 
invalid signature was encountered.
W: Failed to fetch http://archive.canonical.com/ubuntu/dists/zesty/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/unstable/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/testing/InRelease  At 
least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/jessie-updates/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://security.debian.org/dists/jessie/updates/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/wheezy-updates/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://security.debian.org/dists/wheezy/updates/InRelease  
At least one invalid signature was encountered.
W: Failed to fetch http://mirrors.kernel.org/ubuntu/dists/precise/Release.gpg  
At least one invalid signature was encountered.
W: Failed to fetch http://mirrors.kernel.org/ubuntu/dists/trusty/Release.gpg  
At least one invalid signature was encountered.
W: Failed to fetch 
http://archive.canonical.com/ubuntu/dists/precise/Release.gpg  At least one 
invalid signature was encountered.
W: Failed to fetch http://archive.canonical.com/ubuntu/dists/trusty/Release.gpg 
 At least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/jessie/Release.gpg  At 
least one invalid signature was encountered.
W: Failed to fetch http://ftp.debian.org/debian/dists/wheezy/Release.gpg  At 
least one invalid signature was encountered.
W: Some index files failed to download. They have been ignored, or old ones 
used instead.
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Calculating upgrade... Done
The following packages were automatically installed and are no longer required:
  linux-headers-4.4.0-21 linux-headers-4.4.0-21-generic linux-headers-4.4.0-22 
linux-headers-4.4.0-22-generic
  linux-headers-4.4.0-24 linux-headers-4.4.0-24-generic linux-headers-4.4.0-28 
linux-headers-4.4.0-28-generic
  linux-headers-4.4.0-31 linux-headers-4.4.0-31-generic linux-headers-4.4.0-34 
linux-headers-4.4.0-34-generic
  linux-headers-4.4.0-36 linux-headers-4.4.0-36-generic linux-headers-4.4.0-38 
linux-headers-4.4.0-38-generic
  linux-image-4.4.0-21-generic linux-image-4.4.0-22-generic 
linux-image-4.4.0-24-generic
  linux-image-4.4.0-28-generic linux-image-4.4.0-31-generic 
linux-image-4.4.0-34-generic
  linux-image-4.4.0-36-generic linux-image-4.4.0-38-generic
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.


I'll attach the full terminal log soon.

Thanks

ProblemType: Bug
DistroRelease: Ubuntu 16.04
Package: apt 1.2.15
ProcVersionSignature: Ubuntu 4.4.0-45.66-generic 4.4.21
Uname: Linux 4.4.0-45-generic x86_64
NonfreeKernelModules: zfs zunicode zcommon znvpair zavl
ApportVersion: 2.20.1-0ubuntu2.1
Architecture: amd64
CurrentDesktop: Unity
Date: Wed Nov 16 12:29:54 2016
InstallationDate: Installed on 2012-10-18 (1490 days ago)
InstallationMedia: Ubuntu 12.04.1 LTS "Precise Pangolin" - Release amd64 
(20120823.1)
SourcePackage: apt
UpgradeStatus: Upgraded to xenial on 2016-04-30 (200 days ago)

** Affects: apt (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug xenial

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  At least one invalid signature was encountered.

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